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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ru2:A (1.48) BS04 HHR 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    2 1tmm:A (1.25) BS05 HHR 2.7.6.3 GO:0000287 ... P26281 15952765 MOAD: Kd=1.1uM
    3 1tmm:B (1.25) BS04 HHR 2.7.6.3 GO:0000287 ... P26281 15952765 MOAD: Kd=1.1uM
    4 2w54:B (3.3) BS02 HHR 1.1.1.204 GO:0005506 ... O54051 19109249 PDBbind: -logKd/Ki=6.98, Ki=103.6nM
    5 2w54:D (3.3) BS02 HHR 1.1.1.204 GO:0005506 ... O54051 19109249
    6 2w54:F (3.3) BS02 HHR 1.1.1.204 GO:0005506 ... O54051 19109249
    7 2w54:H (3.3) BS02 HHR 1.1.1.204 GO:0005506 ... O54051 19109249
    8 3ip0:A (0.89) BS04 HHR 2.7.6.3 GO:0000287 ... P26281 12578370
    9 7s2i:A (2.32) BS01 HHR 2.5.1.15 GO:0004156 ... P0C002 37419898
    10 7s2i:B (2.32) BS01 HHR 2.5.1.15 GO:0004156 ... P0C002 37419898
    11 7s2m:A (2.42) BS01 HHR 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    12 7s2m:B (2.42) BS01 HHR 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    13 7s2m:C (2.42) BS01 HHR 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    14 7tq1:A (2.73) BS01 HHR 2.5.1.15 GO:0004156 ... P0AC13 37419898
    15 7tq1:B (2.73) BS01 HHR 2.5.1.15 GO:0004156 ... P0AC13 37419898
    16 8d5h:A (1.72) BS01 HHR N/A GO:0004156 ... N/A N/A
    17 8d5h:B (1.72) BS01 HHR N/A GO:0004156 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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