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BioLiP Library
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afj:A (-1.00) BS01 HG ? GO:0015097 ... P04129 9188683
    2 1arm:A (1.76) BS01 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    3 1arm:A (1.76) BS02 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    4 1ht3:A (1.8) BS01 HG 3.4.21.64 GO:0004252 ... P06873 11886076
    5 1ht3:A (1.8) BS02 HG 3.4.21.64 GO:0004252 ... P06873 11886076
    6 1iac:A (2.1) BS01 HG 3.4.24.21 GO:0004222 ... P07584 8445658
    7 1in0:B (2.14) BS01 HG ? GO:0000166 ... P44096 12943362
    8 1pj8:A (2.2) BS02 HG 3.4.21.64 GO:0004252 ... P06873 8811735
    9 1pj8:A (2.2) BS03 HG 3.4.21.64 GO:0004252 ... P06873 8811735
    10 1ptk:A (2.4) BS01 HG 3.4.21.64 GO:0004252 ... P06873 8253733
    11 1pvm:A (1.5) BS01 HG ? GO:0046872 ... Q9HLD9 18021800
    12 1pvm:B (1.5) BS01 HG ? GO:0046872 ... Q9HLD9 18021800
    13 1qml:A (3.0) BS01 HG 4.2.1.24 GO:0004655 ... P05373 10739915
    14 2ca2:A (1.9) BS01 HG 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 3151020
    15 2j4f:A (2.8) BS01 HG 3.1.1.7 GO:0001507 ... P04058 7981200
    16 2j4f:A (2.8) BS02 HG 3.1.1.7 GO:0001507 ... P04058 7981200
    17 2o9e:A (2.2) BS01 HG ? GO:0005515 ... P60844 17376483
    18 2pgv:A (1.79) BS01 HG 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 17642512
    19 2z9g:A (1.86) BS01 HG 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 17981158
    20 3ca2:A (2.0) BS01 HG 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 3151020
    21 3f0p:A (1.64) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    22 3f0p:B (1.64) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    23 3f2f:A (1.98) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    24 3f2f:B (1.98) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    25 3f2h:A (2.0) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    26 3f2h:B (2.0) BS01 HG 4.99.1.2 GO:0016829 ... P77072 19004822
    27 3pcy:A (1.9) BS01 HG ? GO:0005507 ... P00299 3941073
    28 4jkn:A (1.536) BS01 HG 1.20.9.1 GO:0005507 ... P00282 25265377
    29 4jkn:B (1.536) BS01 HG 1.20.9.1 GO:0005507 ... P00282 25265377
    30 4jkn:C (1.536) BS01 HG 1.20.9.1 GO:0005507 ... P00282 25265377
    31 4jkn:D (1.536) BS01 HG 1.20.9.1 GO:0005507 ... P00282 25265377
    32 4m1m:A (3.8) BS01 HG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 24155053
    33 4m1m:A (3.8) BS02 HG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 24155053
    34 4m1m:A (3.8) BS03 HG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 24155053
    35 4m1m:B (3.8) BS01 HG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 24155053
    36 4m1m:B (3.8) BS02 HG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 24155053
    37 4ua1:A (2.56) BS01 HG ? GO:0003677 ... Q799U3 26150423
    38 4ua1:B (2.56) BS01 HG ? GO:0003677 ... Q799U3 26150423
    39 5c17:A (1.24) BS01 HG ? GO:0018836 ... Q7DJN2 26820485
    40 5crl:B (2.8) BS01 HG ? GO:0003677 ... P0A183 27641146
    41 5gx1:A (1.6) BS01 HG ? GO:0004341 ... Q95YI4 28009544
    42 5gx1:A (1.6) BS02 HG ? GO:0004341 ... Q95YI4 28009544
    43 5gx2:A (1.6) BS01 HG ? GO:0004341 ... Q95YI4 28009544
    44 5gx3:A (1.6) BS01 HG ? GO:0004341 ... Q95YI4 28009544
    45 5gx4:A (1.6) BS01 HG ? GO:0004341 ... Q95YI4 28009544
    46 5xfe:A (1.5) BS01 HG ? GO:0004341 ... Q95YI4 28989719
    47 5xfe:A (1.5) BS02 HG ? GO:0004341 ... Q95YI4 28989719
    48 6nwh:A (2.03) BS03 HG ? GO:0006355 ... Q8XMB9 31282473
    49 6nwh:A (2.03) BS04 HG ? GO:0006355 ... Q8XMB9 31282473
    50 6nwh:B (2.03) BS03 HG ? GO:0006355 ... Q8XMB9 31282473
    51 6nwh:B (2.03) BS04 HG ? GO:0006355 ... Q8XMB9 31282473
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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