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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14601 8wzj:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14602 8wzk:A (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14603 8wzk:B (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14604 8wzk:C (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14605 8wzk:D (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14606 8wzm:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14607 8wzm:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14608 8wzm:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14609 8wzm:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    14610 8x1w:A (2.1) BS01 HEM N/A N/A Q6WG30 N/A
    14611 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    14612 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    14613 8x3e:A (2.5) BS02 HEM N/A N/A Q6WG30 N/A
    14614 8xlp:E (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    14615 8xlp:F (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    14616 8xlp:e (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    14617 8xlp:f (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    14618 8xr6:E (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    14619 8xr6:V (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    14620 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    14621 8xr6:v (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    14622 8y9x:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    14623 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    14624 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    14625 9at2:A (2.25) BS01 HEM N/A N/A P48775 39106326
    14626 9at2:B (2.25) BS02 HEM N/A N/A P48775 39106326
    14627 9at2:C (2.25) BS01 HEM N/A N/A P48775 39106326
    14628 9at2:D (2.25) BS02 HEM N/A N/A P48775 39106326
    14629 9b17:A (2.65) BS01 HEM N/A N/A P48775 39106326
    14630 9b17:B (2.65) BS01 HEM N/A N/A P48775 39106326
    14631 9b17:C (2.65) BS01 HEM N/A N/A P48775 39106326
    14632 9b17:D (2.65) BS02 HEM N/A N/A P48775 39106326
    14633 9b1q:A (2.624) BS01 HEM N/A N/A P48775 39106326
    14634 9b1q:B (2.624) BS02 HEM N/A N/A P48775 39106326
    14635 9b1q:C (2.624) BS01 HEM N/A N/A P48775 39106326
    14636 9b1q:D (2.624) BS02 HEM N/A N/A P48775 39106326
    14637 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    14638 9bdj:A (4.0) BS01 HEM N/A N/A P00432 N/A
    14639 9bdj:B (4.0) BS01 HEM N/A N/A P00432 N/A
    14640 9bdj:C (4.0) BS01 HEM N/A N/A P00432 N/A
    14641 9bdj:D (4.0) BS01 HEM N/A N/A P00432 N/A
    14642 9bts:A (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14643 9bts:B (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14644 9bts:C (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14645 9bts:D (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14646 9bts:E (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14647 9bts:F (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14648 9bts:G (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14649 9bts:H (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    14650 9bts:a (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14651 9bts:b (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14652 9bts:c (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14653 9bts:d (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14654 9bts:e (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14655 9bts:f (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14656 9bts:g (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14657 9bts:h (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    14658 9evx:E (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    14659 9evx:F (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    14660 9evx:e (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    14661 9evx:f (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    14662 9it8:A (1.954) BS03 HEM N/A N/A P80025 N/A
    14663 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    14664 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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