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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1pmb:A (2.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 2383370
    1602 1pmb:B (2.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 2383370
    1603 1po5:A (1.6) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 14563924
    1604 1pp9:C (2.1) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1605 1pp9:C (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1606 1pp9:P (2.1) BS03 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1607 1pp9:P (2.1) BS04 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1608 1ppj:C (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1609 1ppj:C (2.1) BS03 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1610 1ppj:P (2.1) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1611 1ppj:P (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    1612 1pq2:A (2.7) BS01 HEM 1.14.14.1 GO:0002933 ... P10632 14676196
    1613 1pq2:B (2.7) BS02 HEM 1.14.14.1 GO:0002933 ... P10632 14676196
    1614 1prh:A (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    1615 1prh:B (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    1616 1pth:A (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    1617 1pth:B (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    1618 1pxx:A (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    1619 1pxx:B (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    1620 1pxx:C (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    1621 1pxx:D (2.9) BS01 HEM 1.14.99.1 GO:0004601 ... Q05769 12925531
    1622 1q16:B (1.9) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 12910261
    1623 1q16:C (1.9) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 12910261
    1624 1q16:C (1.9) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 12910261
    1625 1q1f:A (1.5) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 15162488
    1626 1q2o:A (1.74) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1627 1q2o:B (1.74) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1628 1q4g:A (2.0) BS03 HEM 1.14.99.1 GO:0001516 ... P05979 14672659
    1629 1q4g:B (2.0) BS02 HEM 1.14.99.1 GO:0001516 ... P05979 14672659
    1630 1q5d:A (1.93) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    1631 1q5e:A (2.65) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    1632 1qcr:C (2.7) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9204897
    1633 1qf7:A (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    1634 1qf7:B (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    1635 1qf7:C (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    1636 1qf7:D (2.2) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    1637 1qgj:A (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q39034 10713531
    1638 1qgj:B (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q39034 10713531
    1639 1qhu:A (2.3) BS01 HEM ? GO:0006879 ... P20058 10504726
    1640 1qi8:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10390349
    1641 1qi8:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10390349
    1642 1qi8:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10390349
    1643 1qi8:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10390349
    1644 1qjs:A (2.9) BS01 HEM ? GO:0006879 ... P20058 10504726
    1645 1qjs:B (2.9) BS01 HEM ? GO:0006879 ... P20058 10504726
    1646 1qlb:C (2.33) BS01 HEM ? GO:0005886 ... P17413 10586875
    1647 1qlb:C (2.33) BS02 HEM ? GO:0005886 ... P17413 10586875
    1648 1qlb:F (2.33) BS01 HEM ? GO:0005886 ... P17413 10586875
    1649 1qlb:F (2.33) BS02 HEM ? GO:0005886 ... P17413 10586875
    1650 1qmq:A (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10557259
    1651 1qo4:A (3.0) BS01 HEM 1.11.1.7 GO:0002215 ... Q42578 11551197
    1652 1qo8:A (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1653 1qo8:A (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1654 1qo8:A (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1655 1qo8:A (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1656 1qo8:D (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1657 1qo8:D (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1658 1qo8:D (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1659 1qo8:D (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    1660 1qom:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    1661 1qom:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    1662 1qpa:A (1.8) BS05 HEM 1.11.1.14 GO:0000302 ... P11542 10024453
    1663 1qpa:B (1.8) BS08 HEM 1.11.1.14 GO:0000302 ... P11542 10024453
    1664 1qpu:A (-1.00) BS01 HEM ? GO:0005506 ... P0ABE7 10393541
    1665 1qpw:A (1.8) BS01 HEM ? GO:0004601 ... P01965 10713517
    1666 1qpw:B (1.8) BS01 HEM ? GO:0004601 ... P02067 10713517
    1667 1qpw:C (1.8) BS01 HEM ? GO:0004601 ... P01965 10713517
    1668 1qpw:D (1.8) BS01 HEM ? GO:0004601 ... P02067 10713517
    1669 1qqw:A (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    1670 1qqw:B (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    1671 1qqw:C (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    1672 1qqw:D (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    1673 1qsh:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    1674 1qsh:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    1675 1qsi:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    1676 1qsi:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    1677 1qw4:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    1678 1qw4:B (2.4) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    1679 1qw5:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    1680 1qw5:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12954642
    1681 1qw6:A (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12954642
    1682 1qwc:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 12954642
    1683 1qwl:A (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    1684 1qwl:B (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    1685 1qwm:A (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    1686 1qwm:B (1.6) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 15023060
    1687 1qws:A (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1688 1qws:B (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1689 1qws:C (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1690 1qws:D (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1691 1qxd:A (2.25) BS01 HEM ? GO:0004601 ... P69905 15341482
    1692 1qxd:B (2.25) BS01 HEM ? GO:0004601 ... P68871 15341482
    1693 1qxd:C (2.25) BS01 HEM ? GO:0004601 ... P69905 15341482
    1694 1qxd:D (2.25) BS01 HEM ? GO:0004601 ... P68871 15341482
    1695 1qxe:A (1.85) BS02 HEM ? GO:0004601 ... P69905 15341482
    1696 1qxe:B (1.85) BS01 HEM ? GO:0004601 ... P68871 15341482
    1697 1qxe:C (1.85) BS02 HEM ? GO:0004601 ... P69905 15341482
    1698 1qxe:D (1.85) BS02 HEM ? GO:0004601 ... P68871 15341482
    1699 1r1x:A (2.15) BS01 HEM ? GO:0004601 ... P69905 15495251
    1700 1r1x:B (2.15) BS01 HEM ? GO:0004601 ... P68871 15495251
    1701 1r1y:A (1.8) BS01 HEM ? GO:0004601 ... P69905 15495251
    1702 1r1y:B (1.8) BS01 HEM ? GO:0004601 ... P68871 15495251
    1703 1r1y:C (1.8) BS01 HEM ? GO:0004601 ... P69905 15495251
    1704 1r1y:D (1.8) BS01 HEM ? GO:0004601 ... P68871 15495251
    1705 1r2c:C (2.86) BS01 HEM ? GO:0005506 ... P07173 15073325
    1706 1r2c:C (2.86) BS02 HEM ? GO:0005506 ... P07173 15073325
    1707 1r2c:C (2.86) BS03 HEM ? GO:0005506 ... P07173 15073325
    1708 1r2c:C (2.86) BS04 HEM ? GO:0005506 ... P07173 15073325
    1709 1r35:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    1710 1r35:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    1711 1r9o:A (2.0) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 15181000
    1712 1rap:A (2.25) BS01 HEM ? GO:0005515 ... P00044 8401228
    1713 1rcp:A (2.0) BS01 HEM ? GO:0005506 ... P00147 8676382
    1714 1rcp:B (2.0) BS01 HEM ? GO:0005506 ... P00147 8676382
    1715 1re9:A (1.45) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    1716 1rf9:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    1717 1rom:A (2.0) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 9334748
    1718 1rps:A (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1719 1rps:B (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1720 1rps:C (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1721 1rps:D (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1722 1rq3:A (1.91) BS01 HEM ? GO:0004601 ... P69905 14705937
    1723 1rq3:B (1.91) BS01 HEM ? GO:0004601 ... P68871 14705937
    1724 1rq3:C (1.91) BS01 HEM ? GO:0004601 ... P69905 14705937
    1725 1rq3:D (1.91) BS01 HEM ? GO:0004601 ... P68871 14705937
    1726 1rq4:A (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1727 1rq4:B (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1728 1rq4:C (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1729 1rq4:D (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1730 1rqa:A (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1731 1rqa:B (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1732 1rqa:C (2.11) BS01 HEM ? GO:0004601 ... P69905 14705937
    1733 1rqa:D (2.11) BS01 HEM ? GO:0004601 ... P68871 14705937
    1734 1rs6:A (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 15122883
    1735 1rs6:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 15122883
    1736 1rs7:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 15122883
    1737 1rs7:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 15122883
    1738 1rs8:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 15122883
    1739 1rs8:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 15122883
    1740 1rs9:A (2.22) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 15122883
    1741 1rs9:B (2.22) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 15122883
    1742 1rse:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 8794773
    1743 1rte:A (2.0) BS01 HEM ? GO:0005344 ... P9WN25 15122887
    1744 1rte:B (2.0) BS01 HEM ? GO:0005344 ... P9WN25 15122887
    1745 1rtx:A (1.8) BS01 HEM ? GO:0005344 ... P73925 14736872
    1746 1rvw:A (2.5) BS01 HEM ? GO:0004601 ... P69905 9649306
    1747 1rvw:B (2.5) BS01 HEM ? GO:0004601 ... P68871 9649306
    1748 1ryc:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    1749 1s0h:A (3.0) BS01 HEM ? GO:0004601 ... P01959 16488065
    1750 1s0h:B (3.0) BS01 HEM ? GO:0004601 ... D1MPT0 16488065
    1751 1s1f:A (1.5) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 15659395
    1752 1s56:B (2.43) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    1753 1s5x:A (2.4) BS01 HEM ? GO:0004601 ... P80043 15096204
    1754 1s5x:B (2.4) BS01 HEM ? GO:0004601 ... P80044 15096204
    1755 1s5y:A (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    1756 1s5y:B (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    1757 1s5y:C (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    1758 1s5y:D (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    1759 1s61:A (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    1760 1s61:B (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    1761 1s66:L (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    1762 1s66:U (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    1763 1s67:L (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    1764 1s67:U (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    1765 1s69:A (1.68) BS02 HEM ? GO:0005344 ... P73925 15289104
    1766 1s6a:A (1.69) BS02 HEM ? GO:0005344 ... P73925 15289104
    1767 1sch:A (2.56) BS03 HEM 1.11.1.7 GO:0004601 ... P22195 8805539
    1768 1sch:B (2.56) BS03 HEM 1.11.1.7 GO:0004601 ... P22195 8805539
    1769 1sdk:A (1.8) BS01 HEM ? GO:0004601 ... P69905 7723849
    1770 1sdk:B (1.8) BS01 HEM ? GO:0004601 ... P68871 7723849
    1771 1sdk:C (1.8) BS01 HEM ? GO:0004601 ... P69905 7723849
    1772 1sdk:D (1.8) BS01 HEM ? GO:0004601 ... P68871 7723849
    1773 1sdl:A (1.8) BS01 HEM ? GO:0004601 ... P69905 7723849
    1774 1sdl:B (1.8) BS01 HEM ? GO:0004601 ... P68871 7723849
    1775 1sdl:C (1.8) BS01 HEM ? GO:0004601 ... P69905 7723849
    1776 1sdl:D (1.8) BS01 HEM ? GO:0004601 ... P68871 7723849
    1777 1se6:A (1.75) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 15659395
    1778 1se6:B (1.75) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 15659395
    1779 1sh4:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 15273310
    1780 1shr:A (1.88) BS03 HEM ? GO:0004601 ... P69905 15449937
    1781 1shr:B (1.88) BS05 HEM ? GO:0004601 ... P02042 15449937
    1782 1shr:C (1.88) BS02 HEM ? GO:0004601 ... P69905 15449937
    1783 1shr:D (1.88) BS04 HEM ? GO:0004601 ... P02042 15449937
    1784 1si4:A (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    1785 1si4:B (2.2) BS02 HEM ? GO:0004601 ... P02042 15449937
    1786 1si4:C (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    1787 1si4:D (2.2) BS01 HEM ? GO:0004601 ... P02042 15449937
    1788 1si6:X (1.45) BS01 HEM ? GO:0004439 ... O76745 N/A
    1789 1si8:A (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    1790 1si8:B (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    1791 1si8:C (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    1792 1si8:D (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    1793 1siw:B (2.2) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15122898
    1794 1siw:C (2.2) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    1795 1siw:C (2.2) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    1796 1sj2:A (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    1797 1sj2:B (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    1798 1sk7:A (1.6) BS01 HEM 1.14.99.3 GO:0004392 ... O69002 15122889
    1799 1smi:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    1800 1smi:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218