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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 1ngk:J (2.11) BS02 HEM ? GO:0005344 ... P9WN23 12719529
    1402 1ngk:K (2.11) BS02 HEM ? GO:0005344 ... P9WN23 12719529
    1403 1ngk:L (2.11) BS02 HEM ? GO:0005344 ... P9WN23 12719529
    1404 1nih:B (2.6) BS01 HEM ? GO:0004601 ... P68871 2370669
    1405 1nih:D (2.6) BS01 HEM ? GO:0004601 ... P68871 2370669
    1406 1nm0:A (2.3) BS03 HEM 1.11.1.6 GO:0004096 ... P42321 14646074
    1407 1noc:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 9334294
    1408 1nod:A (2.6) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 9516116
    1409 1nod:B (2.6) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 9516116
    1410 1noo:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    1411 1nos:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 9334294
    1412 1np1:A (2.0) BS01 HEM ? GO:0005576 ... Q26239 9546222
    1413 1np1:B (2.0) BS01 HEM ? GO:0005576 ... Q26239 9546222
    1414 1np4:A (1.5) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 9782054
    1415 1npf:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 14517970
    1416 1npg:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 14517970
    1417 1nqp:A (1.73) BS01 HEM ? GO:0004601 ... P69905 12659864
    1418 1nqp:B (1.73) BS01 HEM ? GO:0004601 ... P68871 12659864
    1419 1nqp:C (1.73) BS01 HEM ? GO:0004601 ... P69905 12659864
    1420 1nqp:D (1.73) BS01 HEM ? GO:0004601 ... P68871 12659864
    1421 1nr6:A (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... P00179 12899620
    1422 1ns6:A (2.05) BS01 HEM ? GO:0004601 ... P01958 12939139
    1423 1ns6:B (2.05) BS01 HEM ? GO:0004601 ... P02062 12939139
    1424 1ns9:A (1.6) BS01 HEM ? GO:0004601 ... P01958 12939139
    1425 1ns9:B (1.6) BS01 HEM ? GO:0004601 ... P02062 12939139
    1426 1nse:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 9875848
    1427 1nse:B (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 9875848
    1428 1nsi:A (2.55) BS02 HEM 1.14.13.39 GO:0004517 ... P35228 10409685
    1429 1nsi:B (2.55) BS03 HEM 1.14.13.39 GO:0004517 ... P35228 10409685
    1430 1nsi:C (2.55) BS02 HEM 1.14.13.39 GO:0004517 ... P35228 10409685
    1431 1nsi:D (2.55) BS03 HEM 1.14.13.39 GO:0004517 ... P35228 10409685
    1432 1ntf:A (1.8) BS01 HEM ? GO:0004439 ... O76745 15637157
    1433 1ntk:C (2.6) BS01 HEM ? GO:0005739 ... P00157 12885240
    1434 1ntk:C (2.6) BS02 HEM ? GO:0005739 ... P00157 12885240
    1435 1ntk:D (2.6) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12885240
    1436 1ntm:C (2.4) BS01 HEM ? GO:0005739 ... P00157 12885240
    1437 1ntm:C (2.4) BS02 HEM ? GO:0005739 ... P00157 12885240
    1438 1ntm:D (2.4) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12885240
    1439 1ntz:C (2.6) BS01 HEM ? GO:0005739 ... P00157 12885240
    1440 1ntz:C (2.6) BS02 HEM ? GO:0005739 ... P00157 12885240
    1441 1ntz:D (2.6) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12885240
    1442 1nu1:C (3.2) BS01 HEM ? GO:0005739 ... P00157 12885240
    1443 1nu1:C (3.2) BS02 HEM ? GO:0005739 ... P00157 12885240
    1444 1nu1:D (3.2) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12885240
    1445 1nwi:A (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    1446 1nwi:A (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    1447 1nwi:B (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    1448 1nwi:C (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    1449 1nwi:C (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    1450 1nwi:D (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    1451 1nwi:D (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    1452 1nwn:A (2.8) BS01 HEM ? GO:0001666 ... P02213 12705827
    1453 1nwn:A (2.8) BS02 HEM ? GO:0001666 ... P02213 12705827
    1454 1nwn:B (2.8) BS01 HEM ? GO:0001666 ... P02213 12705827
    1455 1nwn:B (2.8) BS02 HEM ? GO:0001666 ... P02213 12705827
    1456 1nx7:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 15273310
    1457 1nxf:A (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    1458 1nxf:B (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    1459 1nz2:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    1460 1nz3:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    1461 1nz4:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    1462 1nz5:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    1463 1o16:A (1.95) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 12939145
    1464 1o1i:A (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    1465 1o1i:B (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    1466 1o1j:A (1.9) BS01 HEM ? GO:0004601 ... P69905 N/A
    1467 1o1j:A (1.9) BS02 HEM ? GO:0004601 ... P69905 N/A
    1468 1o1j:B (1.9) BS01 HEM ? GO:0004601 ... P68871 N/A
    1469 1o1j:D (1.9) BS01 HEM ? GO:0004601 ... P68871 N/A
    1470 1o1k:A (2.0) BS01 HEM ? GO:0004601 ... P69905 N/A
    1471 1o1k:B (2.0) BS01 HEM ? GO:0004601 ... P68871 N/A
    1472 1o1k:C (2.0) BS01 HEM ? GO:0004601 ... P69905 N/A
    1473 1o1k:D (2.0) BS01 HEM ? GO:0004601 ... P68871 N/A
    1474 1o1l:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    1475 1o1l:A (1.8) BS02 HEM ? GO:0004601 ... P69905 N/A
    1476 1o1l:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1477 1o1l:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1478 1o1m:A (1.85) BS01 HEM ? GO:0004601 ... P69905 N/A
    1479 1o1m:A (1.85) BS02 HEM ? GO:0004601 ... P69905 N/A
    1480 1o1m:B (1.85) BS01 HEM ? GO:0004601 ... P68871 N/A
    1481 1o1m:D (1.85) BS01 HEM ? GO:0004601 ... P68871 N/A
    1482 1o1n:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    1483 1o1n:A (1.8) BS02 HEM ? GO:0004601 ... P69905 N/A
    1484 1o1n:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1485 1o1n:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1486 1o1o:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    1487 1o1o:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1488 1o1o:C (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    1489 1o1o:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1490 1o1p:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    1491 1o1p:A (1.8) BS02 HEM ? GO:0004601 ... P69905 N/A
    1492 1o1p:B (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1493 1o1p:D (1.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    1494 1o76:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    1495 1o76:B (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    1496 1o9x:A (3.2) BS01 HEM ? GO:0003677 ... P02768 12846933
    1497 1oaf:A (1.4) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    1498 1oag:A (1.75) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    1499 1obm:A (1.85) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9545280
    1500 1odo:A (1.85) BS01 HEM ? GO:0004497 ... Q9KZR7 14691240
    1501 1ofj:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    1502 1ofk:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    1503 1oj6:A (1.95) BS01 HEM 1.7.-.- GO:0001666 ... Q9NPG2 12962627
    1504 1oj6:A (1.95) BS02 HEM 1.7.-.- GO:0001666 ... Q9NPG2 12962627
    1505 1oj6:B (1.95) BS01 HEM 1.7.-.- GO:0001666 ... Q9NPG2 12962627
    1506 1oj6:C (1.95) BS01 HEM 1.7.-.- GO:0001666 ... Q9NPG2 12962627
    1507 1oj6:D (1.95) BS01 HEM 1.7.-.- GO:0001666 ... Q9NPG2 12962627
    1508 1om4:A (1.75) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1509 1om4:B (1.75) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1510 1om5:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1511 1om5:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1512 1or4:A (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    1513 1or4:B (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    1514 1or6:A (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    1515 1or6:B (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    1516 1out:A (2.3) BS01 HEM ? GO:0004601 ... P02019 8683580
    1517 1out:B (2.3) BS01 HEM ? GO:0004601 ... P02142 8683580
    1518 1ouu:A (2.5) BS01 HEM ? GO:0004601 ... P02019 8683580
    1519 1ouu:B (2.5) BS01 HEM ? GO:0004601 ... P02142 8683580
    1520 1ouu:C (2.5) BS01 HEM ? GO:0004601 ... P02019 8683580
    1521 1ouu:D (2.5) BS01 HEM ? GO:0004601 ... P02142 8683580
    1522 1oxa:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 7749919
    1523 1oyk:A (2.59) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1524 1oyk:B (2.59) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1525 1oyl:A (1.59) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1526 1oyl:B (1.59) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1527 1oze:A (2.19) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1528 1oze:B (2.19) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1529 1ozl:A (1.58) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1530 1ozl:B (1.58) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1531 1ozr:A (1.74) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1532 1ozr:B (1.74) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1533 1ozw:A (1.55) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1534 1ozw:B (1.55) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 12842469
    1535 1p0v:A (2.05) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1536 1p0v:B (2.05) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1537 1p0w:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1538 1p0w:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1539 1p0x:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1540 1p0x:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 14653735
    1541 1p2e:A (2.2) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1542 1p2e:A (2.2) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1543 1p2e:A (2.2) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1544 1p2e:A (2.2) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1545 1p2h:A (2.1) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1546 1p2h:A (2.1) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1547 1p2h:A (2.1) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1548 1p2h:A (2.1) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    1549 1p2y:A (2.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    1550 1p3t:A (2.1) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    1551 1p3u:A (1.75) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    1552 1p3v:A (2.25) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 12819228
    1553 1p6h:A (1.98) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1554 1p6h:B (1.98) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1555 1p6i:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1556 1p6i:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1557 1p6j:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1558 1p6j:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1559 1p6k:A (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1560 1p6k:B (1.78) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 14718923
    1561 1p6l:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1562 1p6l:B (2.35) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1563 1p6m:A (2.27) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1564 1p6m:B (2.27) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1565 1p6n:A (2.5) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1566 1p6n:B (2.5) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 14718923
    1567 1p7r:A (2.85) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    1568 1p7y:A (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1569 1p7y:B (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1570 1p7y:C (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1571 1p7y:D (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1572 1p7z:A (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1573 1p7z:B (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1574 1p7z:C (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1575 1p7z:D (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1576 1p80:A (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1577 1p80:B (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1578 1p80:C (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1579 1p80:D (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    1580 1pa2:A (1.45) BS03 HEM 1.11.1.7 GO:0002215 ... Q42578 11117266
    1581 1pbx:A (2.5) BS01 HEM ? GO:0004601 ... P80043 1560461
    1582 1pbx:B (2.5) BS01 HEM ? GO:0004601 ... P80044 1560461
    1583 1pee:A (1.5) BS01 HEM ? GO:0005576 ... Q26241 N/A
    1584 1pge:A (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1585 1pge:B (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1586 1pgf:A (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1587 1pgf:B (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1588 1pgg:A (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1589 1pgg:B (4.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8652509
    1590 1pha:A (1.63) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 8485133
    1591 1phb:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 8485133
    1592 1phc:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3768350
    1593 1phd:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    1594 1phe:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    1595 1phf:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    1596 1phg:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 3442650
    1597 1pkf:A (2.1) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    1598 1pl3:A (1.9) BS01 HEM 1.1.99.18 N/A Q01738 12796496
    1599 1pl3:B (1.9) BS01 HEM 1.1.99.18 N/A Q01738 12796496
    1600 1pm1:X (1.1) BS01 HEM ? GO:0005576 ... Q26241 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218