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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1hbr:A (2.3) BS01 HEM ? GO:0004601 ... P02001 10037733
    802 1hbr:B (2.3) BS01 HEM ? GO:0004601 ... P02112 10037733
    803 1hbr:C (2.3) BS01 HEM ? GO:0004601 ... P02001 10037733
    804 1hbr:D (2.3) BS01 HEM ? GO:0004601 ... P02112 10037733
    805 1hbs:A (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    806 1hbs:B (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    807 1hbs:C (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    808 1hbs:D (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    809 1hbs:E (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    810 1hbs:F (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    811 1hbs:G (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    812 1hbs:H (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    813 1hbz:A (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 1426241
    814 1hch:A (1.57) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    815 1hco:A (2.7) BS01 HEM ? GO:0004601 ... P69905 7373648
    816 1hco:B (2.7) BS01 HEM ? GO:0004601 ... P68871 7373648
    817 1hcz:A (1.96) BS01 HEM ? GO:0005506 ... P36438 8762139
    818 1hda:A (2.2) BS01 HEM ? GO:0004601 ... P01966 8411160
    819 1hda:B (2.2) BS01 HEM ? GO:0004601 ... P02070 8411160
    820 1hda:C (2.2) BS01 HEM ? GO:0004601 ... P01966 8411160
    821 1hda:D (2.2) BS01 HEM ? GO:0004601 ... P02070 8411160
    822 1hdb:A (2.2) BS01 HEM ? GO:0004601 ... P69905 8639677
    823 1hdb:B (2.2) BS01 HEM ? GO:0004601 ... P68871 8639677
    824 1hdb:C (2.2) BS01 HEM ? GO:0004601 ... P69905 8639677
    825 1hdb:D (2.2) BS01 HEM ? GO:0004601 ... P68871 8639677
    826 1hds:A (1.98) BS01 HEM ? GO:0004601 ... P01972 N/A
    827 1hds:B (1.98) BS01 HEM ? GO:0004601 ... P02074 N/A
    828 1hds:C (1.98) BS01 HEM ? GO:0004601 ... P01972 N/A
    829 1hds:D (1.98) BS01 HEM ? GO:0004601 ... P02074 N/A
    830 1hga:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    831 1hga:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    832 1hga:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    833 1hga:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    834 1hgb:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    835 1hgb:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    836 1hgb:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    837 1hgb:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    838 1hgc:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    839 1hgc:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    840 1hgc:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    841 1hgc:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    842 1hho:A (2.1) BS01 HEM ? GO:0004601 ... P69905 6644819
    843 1hho:B (2.1) BS01 HEM ? GO:0004601 ... P68871 6644819
    844 1hjt:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9533619
    845 1hko:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 8613986
    846 1hlb:A (2.5) BS01 HEM ? GO:0001666 ... P80018 7650740
    847 1hlm:A (2.9) BS01 HEM ? GO:0005344 ... P80017 2049384
    848 1hrm:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 7849057
    849 1hro:A (2.2) BS01 HEM ? GO:0009055 ... P00080 8809072
    850 1hro:B (2.2) BS01 HEM ? GO:0009055 ... P00080 8809072
    851 1hsr:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 9257700
    852 1hsy:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 7654702
    853 1ht5:A (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 11318639
    854 1ht5:B (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 11318639
    855 1ht8:A (2.69) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 11318639
    856 1ht8:B (2.69) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 11318639
    857 1hv4:A (2.8) BS01 HEM ? GO:0004601 ... P01990 11601851
    858 1hv4:B (2.8) BS01 HEM ? GO:0004601 ... P02118 11601851
    859 1hv4:C (2.8) BS01 HEM ? GO:0004601 ... P01990 11601851
    860 1hv4:D (2.8) BS01 HEM ? GO:0004601 ... P02118 11601851
    861 1hv4:E (2.8) BS01 HEM ? GO:0004601 ... P01990 11601851
    862 1hv4:F (2.8) BS01 HEM ? GO:0004601 ... P02118 11601851
    863 1hv4:G (2.8) BS01 HEM ? GO:0004601 ... P01990 11601851
    864 1hv4:H (2.8) BS01 HEM ? GO:0004601 ... P02118 11601851
    865 1i3d:A (1.7) BS01 HEM ? GO:0004601 ... P69891 11514664
    866 1i3d:B (1.7) BS01 HEM ? GO:0004601 ... P69891 11514664
    867 1i3e:A (1.86) BS02 HEM ? GO:0004601 ... P69891 11514664
    868 1i3e:B (1.86) BS02 HEM ? GO:0004601 ... P69891 11514664
    869 1i5u:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 11714912
    870 1i77:A (1.95) BS01 HEM ? GO:0009055 ... Q9L915 11358521
    871 1i77:A (1.95) BS02 HEM ? GO:0009055 ... Q9L915 11358521
    872 1i77:A (1.95) BS03 HEM ? GO:0009055 ... Q9L915 11358521
    873 1i77:A (1.95) BS04 HEM ? GO:0009055 ... Q9L915 11358521
    874 1i83:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    875 1i83:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    876 1ib7:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 N/A
    877 1ibe:A (1.8) BS01 HEM ? GO:0004601 ... P01958 8980683
    878 1ibe:B (1.8) BS01 HEM ? GO:0004601 ... P02062 8980683
    879 1icc:A (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    880 1icc:B (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    881 1icc:C (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    882 1icc:D (2.0) BS01 HEM ? GO:0020037 ... P04166 11583146
    883 1idr:A (1.9) BS01 HEM ? GO:0005344 ... P9WN25 11483493
    884 1idr:B (1.9) BS01 HEM ? GO:0005344 ... P9WN25 11483493
    885 1ike:A (1.5) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 11560480
    886 1ikj:A (1.27) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 11560480
    887 1io7:A (1.5) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    888 1io7:B (1.5) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    889 1io8:A (2.0) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    890 1io8:B (2.0) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    891 1io9:A (2.05) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    892 1io9:B (2.05) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 12237217
    893 1iph:A (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 7663946
    894 1iph:B (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 7663946
    895 1iph:C (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 7663946
    896 1iph:D (2.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 7663946
    897 1irc:A (2.17) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8204590
    898 1ird:A (1.25) BS01 HEM ? GO:0004601 ... P69905 N/A
    899 1ird:B (1.25) BS01 HEM ? GO:0004601 ... P68871 N/A
    900 1irv:A (1.9) BS01 HEM ? GO:0005515 ... P00044 8718869
    901 1irw:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8718869
    902 1it2:A (1.6) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    903 1it2:B (1.6) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    904 1it3:A (2.1) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    905 1it3:B (2.1) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    906 1it3:C (2.1) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    907 1it3:D (2.1) BS01 HEM ? GO:0005344 ... Q7SID0 11923284
    908 1ith:A (2.5) BS01 HEM ? GO:0005344 ... P06148 1515107
    909 1ith:B (2.5) BS01 HEM ? GO:0005344 ... P06148 1515107
    910 1itk:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 12172540
    911 1itk:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 12172540
    912 1ivj:A (1.9) BS02 HEM 1.14.14.18 GO:0001525 ... P06762 12235152
    913 1iw0:A (1.4) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    914 1iw0:B (1.4) BS02 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    915 1iw0:C (1.4) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    916 1iw1:A (1.5) BS02 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    917 1iw1:B (1.5) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    918 1iw1:C (1.5) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14645223
    919 1iwh:A (1.55) BS01 HEM ? GO:0004601 ... P01958 12122004
    920 1iwh:B (1.55) BS01 HEM ? GO:0004601 ... P02062 12122004
    921 1iwi:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14661963
    922 1iwj:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14661963
    923 1iwk:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14661963
    924 1ix3:A (2.0) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 12924938
    925 1ix4:A (1.8) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 12924938
    926 1iyn:A (1.6) BS01 HEM 1.11.1.11
    1.11.1.7
    GO:0004601 ... Q8LNY5 12966073
    927 1izl:0 (3.7) BS01 HEM ? GO:0005506 ... P0A387 12518057
    928 1izl:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 12518057
    929 1izo:A (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    930 1izo:B (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    931 1izo:C (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    932 1j02:A (1.7) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 12924938
    933 1j0o:A (1.15) BS01 HEM ? GO:0009055 ... P00132 14581238
    934 1j0o:A (1.15) BS02 HEM ? GO:0009055 ... P00132 14581238
    935 1j0o:A (1.15) BS03 HEM ? GO:0009055 ... P00132 14581238
    936 1j0o:A (1.15) BS04 HEM ? GO:0009055 ... P00132 14581238
    937 1j0p:A (0.91) BS01 HEM ? GO:0009055 ... P00132 14581238
    938 1j0p:A (0.91) BS02 HEM ? GO:0009055 ... P00132 14581238
    939 1j0p:A (0.91) BS03 HEM ? GO:0009055 ... P00132 14581238
    940 1j0p:A (0.91) BS04 HEM ? GO:0009055 ... P00132 14581238
    941 1j0q:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 12893266
    942 1j3y:A (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    943 1j3y:C (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    944 1j3y:E (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    945 1j3y:G (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    946 1j3z:A (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    947 1j3z:C (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    948 1j3z:E (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    949 1j3z:G (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    950 1j40:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    951 1j40:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    952 1j40:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    953 1j40:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    954 1j41:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    955 1j41:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    956 1j41:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    957 1j41:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    958 1j51:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    959 1j51:B (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    960 1j51:C (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    961 1j51:D (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    962 1j52:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    963 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    964 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    965 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    966 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    967 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    968 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    969 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    970 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    971 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    972 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    973 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    974 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    975 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    976 1jaf:A (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    977 1jaf:B (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    978 1jbq:A (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    979 1jbq:B (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    980 1jbq:C (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    981 1jbq:D (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    982 1jbq:E (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    983 1jbq:F (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    984 1jci:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11851415
    985 1jdl:A (1.7) BS01 HEM ? GO:0009055 ... P81154 11679712
    986 1jdo:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9533619
    987 1jdr:A (1.5) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 10220341
    988 1jeb:A (2.1) BS01 HEM ? GO:0004601 ... P02008 11747442
    989 1jeb:B (2.1) BS01 HEM ? GO:0005344 ... P02088 11747442
    990 1jeb:C (2.1) BS01 HEM ? GO:0004601 ... P02008 11747442
    991 1jeb:D (2.1) BS01 HEM ? GO:0005344 ... P02088 11747442
    992 1jex:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 N/A
    993 1jf3:A (1.4) BS01 HEM ? GO:0001666 ... P02216 12211015
    994 1jf4:A (1.4) BS01 HEM ? GO:0001666 ... P15447 12211015
    995 1jfb:A (1.0) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11752781
    996 1jfc:A (1.05) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11752781
    997 1jgc:A (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    998 1jgc:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    999 1jgc:C (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    1000 1jin:A (2.3) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218