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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 3ntb:C (2.27) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665
    5402 3ntb:D (2.27) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665
    5403 3ntg:A (2.19) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5404 3ntg:B (2.19) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5405 3ntg:C (2.19) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5406 3ntg:D (2.19) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5407 3nu1:A (2.5) BS01 HEM ? GO:0046872 ... A0A0E1NWS3 20888343
    5408 3nu1:A (2.5) BS02 HEM ? GO:0046872 ... A0A0E1NWS3 20888343
    5409 3nu1:B (2.5) BS01 HEM ? GO:0046872 ... A0A0E1NWS3 20888343
    5410 3nu1:B (2.5) BS02 HEM ? GO:0046872 ... A0A0E1NWS3 20888343
    5411 3nv5:A (2.41) BS01 HEM ? GO:0004497 ... Q2G8A2 20950270
    5412 3nv6:A (2.2) BS01 HEM ? GO:0004497 ... Q2G8A2 20950270
    5413 3nvr:A (2.148) BS01 HEM ? GO:0020037 ... Q8RBX6 20735135
    5414 3nvr:B (2.148) BS01 HEM ? GO:0020037 ... Q8RBX6 20735135
    5415 3nvu:A (2.038) BS01 HEM ? GO:0020037 ... Q8RBX6 20735135
    5416 3nvu:B (2.038) BS01 HEM ? GO:0020037 ... Q8RBX6 20735135
    5417 3nw2:A (2.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 21684157
    5418 3nw2:B (2.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 21684157
    5419 3nwl:A (2.69) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    5420 3nwl:B (2.69) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    5421 3nwl:C (2.69) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    5422 3nwl:D (2.69) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    5423 3nxu:A (2.0) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 20937904
    5424 3nxu:B (2.0) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 20937904
    5425 3o0r:B (2.7) BS01 HEM 1.7.2.5 GO:0004129 ... Q59647 21109633
    5426 3o0r:B (2.7) BS02 HEM 1.7.2.5 GO:0004129 ... Q59647 21109633
    5427 3o0r:C (2.7) BS01 HEM 1.7.99.7 GO:0005886 ... Q59646 21109633
    5428 3o1a:A (2.5) BS01 HEM 1.14.14.1 GO:0004497 ... Q6ZZI7 20974107
    5429 3o5c:A (1.8) BS01 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5430 3o5c:A (1.8) BS02 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5431 3o5c:B (1.8) BS01 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5432 3o5c:B (1.8) BS02 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5433 3o5c:C (1.8) BS01 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5434 3o5c:C (1.8) BS02 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5435 3o5c:D (1.8) BS01 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5436 3o5c:D (1.8) BS02 HEM 1.11.1.5 GO:0004130 ... Q8EF24 21742904
    5437 3o72:A (1.95) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004325 ... Q8XAS4 21324904
    5438 3o72:B (1.95) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004325 ... Q8XAS4 21324904
    5439 3o72:C (1.95) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004325 ... Q8XAS4 21324904
    5440 3o72:D (1.95) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004325 ... Q8XAS4 21324904
    5441 3o7n:A (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5442 3o7n:B (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5443 3o89:A (1.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    5444 3odq:A (3.1) BS01 HEM ? GO:0004601 ... P69905 21123872
    5445 3odq:B (3.1) BS01 HEM ? GO:0004601 ... P68871 21123872
    5446 3odq:C (3.1) BS01 HEM ? GO:0004601 ... P69905 21123872
    5447 3odq:D (3.1) BS01 HEM ? GO:0004601 ... P68871 21123872
    5448 3oft:A (1.9) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5449 3oft:B (1.9) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5450 3oft:C (1.9) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5451 3ofu:A (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5452 3ofu:B (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5453 3ofu:C (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5454 3ofu:D (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5455 3ofu:E (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5456 3ofu:F (2.8) BS01 HEM ? GO:0004497 ... Q2G637 21154803
    5457 3ogb:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 21193395
    5458 3oia:A (1.65) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5459 3oj1:A (1.52) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5460 3oj1:B (1.52) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5461 3ok5:A (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5462 3ok5:B (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5463 3ol5:A (1.75) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5464 3onz:A (2.087) BS01 HEM ? GO:0004601 ... P69905 21863786
    5465 3onz:B (2.087) BS01 HEM ? GO:0004601 ... P68871 21863786
    5466 3oo3:A (2.2) BS01 HEM ? GO:0004497 ... Q6ZZI7 21445994
    5467 3oo4:B (1.9) BS01 HEM ? GO:0004601 ... P68871 21863786
    5468 3ord:A (2.22) BS01 HEM ? GO:0004601 ... Q9NAV8 23325557
    5469 3ord:B (2.22) BS01 HEM ? GO:0004601 ... Q9NAV8 23325557
    5470 3ovu:C (2.83) BS01 HEM ? GO:0004601 ... P69905 N/A
    5471 3ozu:A (2.0) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 21210640
    5472 3ozv:A (2.4) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 21210640
    5473 3ozv:B (2.4) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 21210640
    5474 3ozw:A (2.3) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 21210640
    5475 3ozw:B (2.3) BS02 HEM 1.14.12.17 GO:0005344 ... P39662 21210640
    5476 3ozz:B (1.7) BS01 HEM ? GO:0020037 ... P00171 N/A
    5477 3p3l:A (2.1) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5478 3p3l:B (2.1) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5479 3p3o:A (1.54) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5480 3p3x:A (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5481 3p3x:B (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5482 3p3z:A (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    5483 3p5q:A (2.0) BS01 HEM ? GO:0004601 ... P69905 21636902
    5484 3p5q:B (2.0) BS01 HEM ? GO:0004601 ... P68871 21636902
    5485 3p6m:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5486 3p6n:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5487 3p6o:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5488 3p6p:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5489 3p6q:A (1.95) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5490 3p6r:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5491 3p6s:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5492 3p6t:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5493 3p6u:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5494 3p6v:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5495 3p6w:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5496 3p6x:A (1.65) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    5497 3p99:A (3.0) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22135275
    5498 3p99:B (3.0) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22135275
    5499 3p99:C (3.0) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22135275
    5500 3p99:D (3.0) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22135275
    5501 3p9p:A (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5502 3p9p:A (1.5) BS03 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5503 3p9p:B (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5504 3p9p:B (1.5) BS03 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5505 3p9p:C (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5506 3p9p:C (1.5) BS03 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5507 3p9p:D (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5508 3p9p:D (1.5) BS03 HEM 1.11.1.6 GO:0004096 ... P21179 21332158
    5509 3pc2:A (1.8) BS01 HEM 4.2.1.22 GO:0004122 ... Q9VRD9 21081698
    5510 3pc3:A (1.55) BS01 HEM 4.2.1.22 GO:0004122 ... Q9VRD9 21081698
    5511 3pc4:A (1.7) BS01 HEM 4.2.1.22 GO:0004122 ... Q9VRD9 21081698
    5512 3pel:A (1.9) BS01 HEM ? GO:0004601 ... P60529 21543841
    5513 3pel:B (1.9) BS01 HEM ? GO:0004601 ... P60524 21543841
    5514 3pgh:A (2.5) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5515 3pgh:B (2.5) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5516 3pgh:C (2.5) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5517 3pgh:D (2.5) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5518 3pi1:A (2.002) BS01 HEM ? GO:0019825 ... P41261 N/A
    5519 3pi1:B (2.002) BS01 HEM ? GO:0019825 ... P41261 N/A
    5520 3pi2:A (1.85) BS01 HEM ? GO:0019825 ... P41261 N/A
    5521 3pi2:B (1.85) BS01 HEM ? GO:0019825 ... P41261 N/A
    5522 3pi3:A (1.95) BS01 HEM ? GO:0019825 ... P41261 N/A
    5523 3pi3:B (1.95) BS01 HEM ? GO:0019825 ... P41261 N/A
    5524 3pi4:A (3.17) BS01 HEM ? GO:0019825 ... P41261 N/A
    5525 3pi4:A (3.17) BS02 HEM ? GO:0019825 ... P41261 N/A
    5526 3pi4:B (3.17) BS01 HEM ? GO:0019825 ... P41261 N/A
    5527 3pi8:A (2.2) BS01 HEM ? GO:0004601 ... P01966 N/A
    5528 3pi8:B (2.2) BS01 HEM ? GO:0004601 ... P02070 N/A
    5529 3pi8:C (2.2) BS01 HEM ? GO:0004601 ... P01966 N/A
    5530 3pi8:D (2.2) BS01 HEM ? GO:0004601 ... P02070 N/A
    5531 3pi9:A (2.9) BS01 HEM ? GO:0004601 ... P01966 N/A
    5532 3pi9:B (2.9) BS01 HEM ? GO:0004601 ... P02070 N/A
    5533 3pi9:C (2.9) BS01 HEM ? GO:0004601 ... P01966 N/A
    5534 3pi9:D (2.9) BS01 HEM ? GO:0004601 ... P02070 N/A
    5535 3pia:A (2.1) BS01 HEM ? GO:0004601 ... P01966 N/A
    5536 3pia:B (2.1) BS01 HEM ? GO:0004601 ... P02070 N/A
    5537 3pia:C (2.1) BS01 HEM ? GO:0004601 ... P01966 N/A
    5538 3pia:D (2.1) BS01 HEM ? GO:0004601 ... P02070 N/A
    5539 3pm0:A (2.7) BS01 HEM 1.14.14.1
    4.2.1.152
    GO:0001525 ... Q16678 21147782
    5540 3pne:A (1.97) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5541 3pne:B (1.97) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5542 3pnf:A (1.94) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5543 3pnf:B (1.94) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5544 3png:A (1.88) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5545 3png:B (1.88) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5546 3pnh:A (1.93) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21809851
    5547 3pnh:B (1.93) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21809851
    5548 3prc:C (2.4) BS01 HEM ? GO:0005506 ... P07173 9351808
    5549 3prc:C (2.4) BS02 HEM ? GO:0005506 ... P07173 9351808
    5550 3prc:C (2.4) BS03 HEM ? GO:0005506 ... P07173 9351808
    5551 3prc:C (2.4) BS04 HEM ? GO:0005506 ... P07173 9351808
    5552 3psx:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21603690
    5553 3psx:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21603690
    5554 3pt7:A (2.15) BS01 HEM ? GO:0019825 ... P41261 N/A
    5555 3pt7:B (2.15) BS01 HEM ? GO:0001666 ... P41262 N/A
    5556 3pt8:A (1.762) BS01 HEM ? GO:0019825 ... P41261 N/A
    5557 3pt8:B (1.762) BS01 HEM ? GO:0001666 ... P41262 N/A
    5558 3py4:A (2.42) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    5559 3q08:A (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5560 3q08:B (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5561 3q08:C (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5562 3q08:D (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5563 3q08:E (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5564 3q08:F (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5565 3q08:G (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5566 3q08:H (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5567 3q08:I (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5568 3q08:J (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5569 3q08:K (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5570 3q08:L (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5571 3q08:M (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5572 3q08:N (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5573 3q08:O (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5574 3q08:P (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5575 3q08:Q (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5576 3q08:R (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5577 3q08:S (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5578 3q08:T (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5579 3q09:A (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5580 3q09:B (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5581 3q09:C (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5582 3q09:D (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5583 3q09:E (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5584 3q09:F (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5585 3q09:G (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5586 3q09:H (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5587 3q09:I (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5588 3q09:J (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5589 3q09:K (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5590 3q09:L (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5591 3q09:M (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5592 3q09:N (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5593 3q09:O (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5594 3q09:P (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5595 3q09:Q (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5596 3q09:R (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5597 3q09:S (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5598 3q09:T (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5599 3q3u:A (1.85) BS01 HEM 1.11.1.- GO:0000302 ... Q60FD2 21367853
    5600 3q7d:A (2.4) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 22053353

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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