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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 3n5r:B (2.57) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5202 3n5s:A (2.18) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5203 3n5s:B (2.18) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5204 3n5t:A (2.52) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5205 3n5t:B (2.52) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5206 3n5v:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5207 3n5v:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5208 3n5w:A (1.73) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5209 3n5w:B (1.73) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5210 3n5x:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5211 3n5x:B (1.8) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5212 3n5y:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5213 3n5y:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5214 3n5z:A (2.18) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5215 3n5z:B (2.18) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5216 3n60:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5217 3n60:B (1.98) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5218 3n61:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5219 3n61:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5220 3n62:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5221 3n62:B (1.95) BS05 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5222 3n63:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5223 3n63:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5224 3n64:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5225 3n64:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5226 3n65:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5227 3n65:B (1.8) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5228 3n66:A (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5229 3n66:B (1.78) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5230 3n67:A (2.09) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5231 3n67:B (2.09) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5232 3n68:A (2.53) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5233 3n68:B (2.53) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5234 3n69:A (2.65) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5235 3n69:B (2.65) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5236 3n6a:A (2.49) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5237 3n6a:B (2.49) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5238 3n6b:A (3.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5239 3n6b:B (3.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5240 3n6c:A (3.06) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5241 3n6c:B (3.06) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5242 3n6d:A (3.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5243 3n6d:B (3.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5244 3n6e:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5245 3n6e:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5246 3n6f:A (2.18) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5247 3n6f:B (2.18) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5248 3n6g:A (2.21) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5249 3n6g:B (2.21) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21138269
    5250 3n8f:A (3.25) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5251 3n8f:B (3.25) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5252 3n8v:A (3.05) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5253 3n8v:B (3.05) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5254 3n8w:A (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5255 3n8w:B (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5256 3n8x:A (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5257 3n8x:B (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5258 3n8y:A (2.6) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5259 3n8y:B (2.6) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5260 3n8z:A (2.9) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5261 3n8z:B (2.9) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 20669977
    5262 3n9y:A (2.1) BS01 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5263 3n9y:B (2.1) BS01 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5264 3n9z:A (2.17) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5265 3n9z:B (2.17) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5266 3na0:A (2.5) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5267 3na0:B (2.5) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5268 3na1:A (2.25) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5269 3na1:B (2.25) BS02 HEM 1.14.15.6 GO:0004497 ... P05108 21636783
    5270 3nak:A (3.3) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5271 3nak:B (3.3) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5272 3nc3:A (2.66) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5273 3nc3:B (2.66) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5274 3nc5:A (2.9) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5275 3nc5:B (2.9) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5276 3nc6:A (3.1) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5277 3nc6:B (3.1) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5278 3nc7:A (3.3) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5279 3nc7:B (3.3) BS01 HEM 1.14.15.13 GO:0004497 ... O34926 20690619
    5280 3ner:A (1.45) BS01 HEM ? GO:0020037 ... O43169 21574570
    5281 3ner:B (1.45) BS01 HEM ? GO:0020037 ... O43169 21574570
    5282 3nfe:A (2.01) BS01 HEM ? GO:0004601 ... P45718 20610398
    5283 3nfe:B (2.01) BS01 HEM ? GO:0004601 ... P45720 20610398
    5284 3nfe:C (2.01) BS01 HEM ? GO:0004601 ... P45718 20610398
    5285 3nfe:D (2.01) BS01 HEM ? GO:0004601 ... P45720 20610398
    5286 3ng6:A (2.2) BS01 HEM ? GO:0004601 ... P45718 20610398
    5287 3ng6:B (2.2) BS01 HEM ? GO:0004601 ... P45720 20610398
    5288 3ng6:C (2.2) BS01 HEM ? GO:0004601 ... P45718 20610398
    5289 3ng6:D (2.2) BS01 HEM ? GO:0004601 ... P45720 20610398
    5290 3niu:A (2.94) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5291 3niu:B (2.94) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5292 3nl7:A (1.8) BS01 HEM ? GO:0004601 ... P69905 21193395
    5293 3nl7:B (1.8) BS01 HEM ? GO:0004601 ... P68871 21193395
    5294 3nld:A (2.285) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5295 3nld:B (2.285) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5296 3nle:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5297 3nle:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5298 3nlf:A (2.32) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5299 3nlf:B (2.32) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5300 3nlg:A (2.38) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5301 3nlg:B (2.38) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5302 3nlh:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5303 3nlh:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5304 3nli:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5305 3nli:B (1.98) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20958055
    5306 3nlj:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5307 3nlj:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5308 3nlk:A (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5309 3nlk:B (2.02) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5310 3nlm:A (1.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5311 3nlm:B (1.85) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5312 3nln:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5313 3nln:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5314 3nlo:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5315 3nlo:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5316 3nlp:A (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5317 3nlp:B (2.02) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5318 3nlq:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5319 3nlq:B (2.15) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5320 3nlr:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5321 3nlr:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20958055
    5322 3nlt:A (2.74) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20843082
    5323 3nlt:B (2.74) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20843082
    5324 3nlu:A (2.65) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20843082
    5325 3nlu:B (2.65) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20843082
    5326 3nlv:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5327 3nlv:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5328 3nlw:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5329 3nlw:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5330 3nlx:A (1.87) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5331 3nlx:B (1.87) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5332 3nly:A (1.99) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5333 3nly:B (1.99) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5334 3nlz:A (1.92) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5335 3nlz:B (1.92) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5336 3nm0:A (1.81) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5337 3nm0:B (1.81) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20843082
    5338 3nmi:A (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5339 3nmi:B (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5340 3nmi:C (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5341 3nmi:C (2.01) BS03 HEM ? GO:0005506 ... P0ABE7 20740227
    5342 3nmi:D (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5343 3nmi:D (2.01) BS02 HEM ? GO:0005506 ... P0ABE7 20740227
    5344 3nmi:E (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5345 3nmi:E (2.01) BS03 HEM ? GO:0005506 ... P0ABE7 20740227
    5346 3nmi:F (2.01) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5347 3nmi:F (2.01) BS02 HEM ? GO:0005506 ... P0ABE7 20740227
    5348 3nmj:A (3.1) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5349 3nmj:B (3.1) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5350 3nmj:C (3.1) BS02 HEM ? GO:0005506 ... P0ABE7 20740227
    5351 3nmj:D (3.1) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5352 3nmk:A (2.8) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5353 3nmk:B (2.8) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5354 3nmk:C (2.8) BS02 HEM ? GO:0005506 ... P0ABE7 20740227
    5355 3nmk:D (2.8) BS01 HEM ? GO:0005506 ... P0ABE7 20740227
    5356 3nml:A (1.68) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 21193395
    5357 3nmm:A (1.6) BS01 HEM ? GO:0004601 ... P69905 21193395
    5358 3nmm:B (1.6) BS01 HEM ? GO:0004601 ... P68871 21193395
    5359 3nmm:C (1.6) BS01 HEM ? GO:0004601 ... P69905 21193395
    5360 3nmm:D (1.6) BS01 HEM ? GO:0004601 ... P68871 21193395
    5361 3nn1:A (1.85) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5362 3nn1:B (1.85) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5363 3nn1:C (1.85) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5364 3nn1:D (1.85) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5365 3nn1:E (1.85) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5366 3nn2:A (1.94) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5367 3nn2:B (1.94) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5368 3nn2:C (1.94) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5369 3nn2:D (1.94) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5370 3nn2:E (1.94) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5371 3nn3:A (2.6) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5372 3nn3:B (2.6) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5373 3nn3:C (2.6) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5374 3nn3:D (2.6) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5375 3nn3:E (2.6) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5376 3nn4:A (2.7) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5377 3nn4:B (2.7) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5378 3nn4:C (2.7) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5379 3nn4:D (2.7) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5380 3nn4:E (2.7) BS01 HEM 1.13.11.49 GO:0016491 ... B3U4H7 20600954
    5381 3nny:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20833542
    5382 3nny:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20833542
    5383 3nnz:A (1.97) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20833542
    5384 3nnz:B (1.97) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20833542
    5385 3nod:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 9516116
    5386 3nod:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 9516116
    5387 3nos:A (2.4) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 10074942
    5388 3nos:B (2.4) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 10074942
    5389 3np1:A (2.3) BS01 HEM ? GO:0005576 ... Q26239 9546222
    5390 3np1:B (2.3) BS01 HEM ? GO:0005576 ... Q26239 9546222
    5391 3npl:A (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    5392 3npl:B (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    5393 3nqs:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 20659888
    5394 3nqs:B (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 20659888
    5395 3nse:A (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 9875848
    5396 3nse:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 9875848
    5397 3nt1:A (1.73) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665
    5398 3nt1:B (1.73) BS02 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665
    5399 3ntb:A (2.27) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665
    5400 3ntb:B (2.27) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20810665

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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