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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 3kx5:B (1.686) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 20180779
    5002 3kzi:E (3.6) BS01 HEM ? GO:0005506 ... Q8DIP0 20558739
    5003 3kzi:F (3.6) BS02 HEM ? GO:0005506 ... Q8DIN9 20558739
    5004 3kzi:V (3.6) BS01 HEM ? GO:0005506 ... P0A386 20558739
    5005 3l1m:A (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 20377257
    5006 3l4d:A (2.75) BS01 HEM 1.14.13.70 GO:0004497 ... A2TEF2 21632531
    5007 3l4d:B (2.75) BS01 HEM 1.14.13.70 GO:0004497 ... A2TEF2 21632531
    5008 3l4d:C (2.75) BS01 HEM 1.14.13.70 GO:0004497 ... A2TEF2 21632531
    5009 3l4d:D (2.75) BS01 HEM 1.14.13.70 GO:0004497 ... A2TEF2 21632531
    5010 3l61:A (1.5) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 20297780
    5011 3l62:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 20297780
    5012 3l63:A (1.5) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 20297780
    5013 3l70:C (2.75) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5014 3l70:C (2.75) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5015 3l70:P (2.75) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5016 3l70:P (2.75) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5017 3l71:C (2.84) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5018 3l71:C (2.84) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5019 3l71:P (2.84) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5020 3l71:P (2.84) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5021 3l72:C (3.06) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5022 3l72:C (3.06) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5023 3l72:P (3.06) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5024 3l72:P (3.06) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5025 3l73:C (3.04) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5026 3l73:C (3.04) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5027 3l73:P (3.04) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5028 3l73:P (3.04) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5029 3l74:C (2.76) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5030 3l74:C (2.76) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5031 3l74:P (2.76) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5032 3l74:P (2.76) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5033 3l75:C (2.79) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5034 3l75:C (2.79) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5035 3l75:P (2.79) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5036 3l75:P (2.79) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 N/A
    5037 3lah:A (2.0) BS01 HEM ? GO:0020037 ... Q8RBX6 20162612
    5038 3lah:B (2.0) BS01 HEM ? GO:0020037 ... Q8RBX6 20162612
    5039 3lai:A (2.144) BS01 HEM ? GO:0020037 ... Q8RBX6 20162612
    5040 3lai:B (2.144) BS01 HEM ? GO:0020037 ... Q8RBX6 20162612
    5041 3lai:C (2.144) BS01 HEM ? GO:0020037 ... Q8RBX6 20162612
    5042 3lb1:A (1.76) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5043 3lb1:B (1.76) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5044 3lb2:A (1.06) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5045 3lb2:B (1.06) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5046 3lb3:A (1.85) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5047 3lb3:B (1.85) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5048 3lb4:A (1.56) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5049 3lb4:B (1.56) BS01 HEM ? GO:0004601 ... Q9NAV8 20816071
    5050 3lc4:A (3.1) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 20463018
    5051 3lc4:B (3.1) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 20463018
    5052 3ld6:A (2.8) BS02 HEM 1.14.14.154 GO:0004497 ... Q16850 20149798
    5053 3ld6:B (2.8) BS04 HEM 1.14.14.154 GO:0004497 ... Q16850 20149798
    5054 3lf5:A (1.25) BS01 HEM 1.6.2.2 GO:0020037 ... Q7L1T6 20630863
    5055 3lf5:B (1.25) BS01 HEM 1.6.2.2 GO:0020037 ... Q7L1T6 20630863
    5056 3lgm:A (1.88) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A827 20180905
    5057 3lgm:B (1.88) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A827 20180905
    5058 3lgn:A (1.5) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A827 20180905
    5059 3lgn:B (1.5) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A827 20180905
    5060 3lhb:A (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5061 3lhb:B (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5062 3lhb:C (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5063 3lhb:D (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5064 3lhb:E (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5065 3lhb:F (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5066 3lhb:G (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5067 3lhb:H (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5068 3lhb:I (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5069 3lhb:J (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5070 3lhb:K (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5071 3lhb:L (2.7) BS01 HEM ? GO:0005344 ... P02208 10378271
    5072 3ln0:A (2.2) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5073 3ln0:B (2.2) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5074 3ln0:C (2.2) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5075 3ln0:D (2.2) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5076 3ln1:A (2.4) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5077 3ln1:B (2.4) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5078 3ln1:C (2.4) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5079 3ln1:D (2.4) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5080 3lqd:A (2.8) BS01 HEM ? GO:0004601 ... F2Z285 N/A
    5081 3lqd:B (2.8) BS01 HEM ? GO:0004601 ... P08535 N/A
    5082 3lqd:C (2.8) BS01 HEM ? GO:0004601 ... F2Z285 N/A
    5083 3lqd:D (2.8) BS01 HEM ? GO:0004601 ... P08535 N/A
    5084 3lr7:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 20568729
    5085 3lr9:A (1.55) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 20568729
    5086 3lxh:A (2.2) BS01 HEM ? GO:0004497 ... Q2GB12 20576606
    5087 3lxh:B (2.2) BS01 HEM ? GO:0004497 ... Q2GB12 20576606
    5088 3lxi:A (2.2) BS01 HEM ? GO:0004497 ... Q2GB12 20576606
    5089 3lxi:B (2.2) BS01 HEM ? GO:0004497 ... Q2GB12 20576606
    5090 3m15:A (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5091 3m15:B (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5092 3m15:C (2.6) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5093 3m23:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5094 3m25:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5095 3m26:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5096 3m27:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5097 3m28:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5098 3m29:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5099 3m2a:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5100 3m2b:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5101 3m2c:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5102 3m2d:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5103 3m2e:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5104 3m2f:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5105 3m2g:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5106 3m2h:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5107 3m2i:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 20230048
    5108 3m38:A (1.42) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20421510
    5109 3m39:A (1.65) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20421510
    5110 3m3a:A (1.37) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20421510
    5111 3m3b:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20421510
    5112 3m4b:A (2.5) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5113 3m4b:B (2.5) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5114 3m4b:C (2.5) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5115 3m4b:D (2.5) BS02 HEM ? GO:0005506 ... P0ABE7 20721993
    5116 3m4c:A (1.9) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5117 3m4c:B (1.9) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5118 3m4c:B (1.9) BS04 HEM ? GO:0005506 ... P0ABE7 20721993
    5119 3m4c:C (1.9) BS01 HEM ? GO:0005506 ... P0ABE7 20721993
    5120 3m4c:D (1.9) BS02 HEM ? GO:0005506 ... P0ABE7 20721993
    5121 3m4v:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21110374
    5122 3m4v:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21110374
    5123 3m5q:A (0.93) BS05 HEM 1.11.1.13 GO:0000302 ... Q02567 20356630
    5124 3m79:A (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5125 3m79:B (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5126 3m79:C (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5127 3m79:D (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5128 3m79:E (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5129 3m79:F (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5130 3m79:G (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5131 3m79:H (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    5132 3m8m:A (1.05) BS04 HEM 1.11.1.13 GO:0000302 ... Q02567 20356630
    5133 3mba:A (2.0) BS01 HEM ? GO:0005344 ... P02210 2926816
    5134 3mdm:A (1.6) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5135 3mdr:A (2.0) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5136 3mdr:B (2.0) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5137 3mdt:A (2.3) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5138 3mdt:B (2.3) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5139 3mdv:A (2.4) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5140 3mdv:B (2.4) BS01 HEM 1.14.14.25 GO:0004497 ... Q9Y6A2 20667828
    5141 3me6:A (3.1) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    5142 3me6:B (3.1) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    5143 3me6:C (3.1) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    5144 3me6:D (3.1) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    5145 3mgx:A (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q939Y1 20519494
    5146 3mgx:B (2.1) BS01 HEM 1.14.14.1 GO:0004497 ... Q939Y1 20519494
    5147 3mjp:A (2.76) BS01 HEM ? GO:0004601 ... P24589 N/A
    5148 3mjp:B (2.76) BS01 HEM ? GO:0004601 ... P30893 N/A
    5149 3mjp:C (2.76) BS01 HEM ? GO:0004601 ... P24589 N/A
    5150 3mjp:D (2.76) BS01 HEM ? GO:0004601 ... P30893 N/A
    5151 3mju:A (3.5) BS01 HEM ? GO:0004601 ... P21871 N/A
    5152 3mju:B (3.5) BS01 HEM ? GO:0004601 ... P11342 N/A
    5153 3mk7:A (3.2) BS01 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5154 3mk7:A (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5155 3mk7:D (3.2) BS01 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5156 3mk7:D (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5157 3mk7:G (3.2) BS01 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5158 3mk7:G (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5159 3mk7:K (3.2) BS01 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5160 3mk7:K (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    5161 3mkb:A (1.9) BS01 HEM ? GO:0004601 ... F2Z286 24121325
    5162 3mkb:B (1.9) BS01 HEM ? GO:0004601 ... F2Z287 24121325
    5163 3mkb:C (1.9) BS01 HEM ? GO:0004601 ... F2Z286 24121325
    5164 3mkb:D (1.9) BS01 HEM ? GO:0004601 ... F2Z287 24121325
    5165 3mm1:A (1.42) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    5166 3mm2:A (1.45) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    5167 3mm3:A (1.4) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    5168 3mn0:A (1.65) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20586490
    5169 3mol:A (1.2) BS01 HEM ? GO:0046872 ... G3XD33 20572666
    5170 3mol:B (1.2) BS01 HEM ? GO:0046872 ... G3XD33 20572666
    5171 3mom:A (2.25) BS02 HEM ? GO:0046872 ... G3XD33 20572666
    5172 3mom:B (2.25) BS03 HEM ? GO:0046872 ... G3XD33 20572666
    5173 3mou:A (1.711) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5174 3mou:B (1.711) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    5175 3mqe:A (2.8) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5176 3mqe:B (2.8) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5177 3mqe:C (2.8) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5178 3mqe:D (2.8) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 20709553
    5179 3mus:A (2.0) BS01 HEM ? GO:0020037 ... P04166 21574570
    5180 3mus:B (2.0) BS01 HEM ? GO:0020037 ... P04166 21574570
    5181 3mvc:A (1.401) BS01 HEM ? GO:0019825 ... Q18086 20518498
    5182 3mvc:B (1.401) BS01 HEM ? GO:0019825 ... Q18086 20518498
    5183 3mvf:A (1.4) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 20524697
    5184 3mvr:A (1.76) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20880847
    5185 3mvr:B (1.76) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20880847
    5186 3mym:A (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 21950839
    5187 3mym:B (1.72) BS01 HEM ? GO:0004601 ... Q9NAV8 21950839
    5188 3myn:A (2.194) BS01 HEM ? GO:0004601 ... Q9NAV8 21950839
    5189 3myn:B (2.194) BS01 HEM ? GO:0004601 ... Q9NAV8 21950839
    5190 3mzs:A (2.5) BS01 HEM 1.14.15.6 GO:0004497 ... P00189 21159775
    5191 3mzs:B (2.5) BS01 HEM 1.14.15.6 GO:0004497 ... P00189 21159775
    5192 3mzs:C (2.5) BS01 HEM 1.14.15.6 GO:0004497 ... P00189 21159775
    5193 3mzs:D (2.5) BS01 HEM 1.14.15.6 GO:0004497 ... P00189 21159775
    5194 3n2r:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20673724
    5195 3n2r:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20673724
    5196 3n5p:A (2.39) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5197 3n5p:B (2.39) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5198 3n5q:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5199 3n5q:B (2.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 21138269
    5200 3n5r:A (2.57) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 21138269

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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