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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 3ir6:B (2.8) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 20053990
    4802 3ir6:C (2.8) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    4803 3ir6:C (2.8) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    4804 3ir7:B (2.5) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 20053990
    4805 3ir7:C (2.5) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    4806 3ir7:C (2.5) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    4807 3is7:A (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4808 3is7:B (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4809 3is7:C (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4810 3is7:D (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4811 3is7:E (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4812 3is7:F (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4813 3is7:G (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4814 3is7:H (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4815 3is7:I (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4816 3is7:J (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4817 3is7:K (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4818 3is7:L (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4819 3is7:M (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4820 3is7:N (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4821 3is7:O (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4822 3is7:P (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4823 3is7:Q (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4824 3is7:R (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4825 3is7:S (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4826 3is7:T (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4827 3is7:U (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4828 3is7:V (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4829 3is7:W (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4830 3is7:X (2.1) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4831 3is8:A (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4832 3is8:B (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4833 3is8:C (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4834 3is8:D (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4835 3is8:E (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4836 3is8:F (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4837 3is8:G (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4838 3is8:H (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4839 3is8:I (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4840 3is8:J (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4841 3is8:K (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4842 3is8:L (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4843 3is8:M (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4844 3is8:N (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4845 3is8:O (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4846 3is8:P (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4847 3is8:Q (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4848 3is8:R (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4849 3is8:S (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4850 3is8:T (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4851 3is8:U (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4852 3is8:V (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4853 3is8:W (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4854 3is8:X (2.25) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4855 3ise:A (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4856 3ise:B (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4857 3ise:C (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4858 3ise:D (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4859 3ise:E (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4860 3ise:F (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4861 3ise:G (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4862 3ise:H (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4863 3ise:I (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4864 3ise:J (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4865 3ise:K (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4866 3ise:L (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4867 3ise:M (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4868 3ise:N (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4869 3ise:O (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4870 3ise:P (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4871 3ise:Q (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4872 3ise:R (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4873 3ise:S (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4874 3ise:T (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4875 3ise:U (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4876 3ise:V (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4877 3ise:W (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4878 3ise:X (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4879 3isf:A (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4880 3isf:B (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4881 3isf:C (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4882 3isf:D (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4883 3isf:E (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4884 3isf:F (2.07) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4885 3ivy:A (1.352) BS01 HEM 1.14.15.29 GO:0004497 ... P9WPP1 19846552
    4886 3iw0:A (1.7) BS01 HEM 1.14.15.29 GO:0004497 ... P9WPP1 19846552
    4887 3iw1:A (2.0) BS02 HEM 1.14.15.29 GO:0004497 ... P9WPP1 19846552
    4888 3iw2:A (2.19) BS02 HEM 1.14.15.29 GO:0004497 ... P9WPP1 19846552
    4889 3ixf:A (1.58) BS01 HEM ? GO:0004601 ... Q9NAV7 20445228
    4890 3ixf:B (1.58) BS01 HEM ? GO:0004601 ... Q9NAV7 20445228
    4891 3j2t:H (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4892 3j2t:I (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4893 3j2t:J (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4894 3j2t:K (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4895 3j2t:L (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4896 3j2t:M (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4897 3j2t:N (9.5) BS01 HEM ? GO:0005739 ... P62894 23521171
    4898 3j7b:A (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 25303172
    4899 3j7b:B (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 25303172
    4900 3j7b:C (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 25303172
    4901 3j7b:D (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 25303172
    4902 3jbt:B (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4903 3jbt:D (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4904 3jbt:F (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4905 3jbt:H (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4906 3jbt:J (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4907 3jbt:L (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4908 3jbt:N (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    4909 3jcu:E (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    4910 3jcu:F (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    4911 3jcu:e (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    4912 3jcu:f (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    4913 3jt3:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4914 3jt3:B (2.15) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4915 3jt4:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4916 3jt4:B (1.8) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4917 3jt5:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4918 3jt5:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4919 3jt6:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4920 3jt6:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4921 3jt7:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4922 3jt7:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4923 3jt8:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4924 3jt8:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4925 3jt9:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4926 3jt9:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4927 3jta:A (2.18) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4928 3jta:B (2.18) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20014790
    4929 3jus:A (2.9) BS04 HEM 1.14.14.154 GO:0004497 ... Q16850 20149798
    4930 3jus:B (2.9) BS03 HEM 1.14.14.154 GO:0004497 ... Q16850 20149798
    4931 3juv:A (3.12) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 20149798
    4932 3jws:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4933 3jws:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4934 3jwt:A (2.01) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4935 3jwt:B (2.01) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4936 3jwu:A (1.93) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4937 3jwu:B (1.93) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4938 3jwv:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4939 3jwv:B (1.98) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4940 3jww:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4941 3jww:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4942 3jwx:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4943 3jwx:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4944 3jwy:A (2.24) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4945 3jwy:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4946 3jwz:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4947 3jwz:B (2.4) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 20337441
    4948 3jx0:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4949 3jx0:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4950 3jx1:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4951 3jx1:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4952 3jx2:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4953 3jx2:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4954 3jx3:A (1.95) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4955 3jx3:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4956 3jx4:A (2.26) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4957 3jx4:B (2.26) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4958 3jx5:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4959 3jx5:B (2.15) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4960 3jx6:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4961 3jx6:B (2.35) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 20337441
    4962 3k1o:A (2.89) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488
    4963 3k3u:A (1.63) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    4964 3k3u:B (1.63) BS01 HEM ? GO:0004601 ... Q9NAV8 N/A
    4965 3k4f:A (2.17) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 19954435
    4966 3k4f:B (2.17) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 19954435
    4967 3k8b:A (2.3) BS01 HEM ? GO:0004601 ... P81023 N/A
    4968 3k8b:B (2.3) BS01 HEM ? GO:0004601 ... P84479 N/A
    4969 3k8b:C (2.3) BS01 HEM ? GO:0004601 ... P81023 N/A
    4970 3k8b:D (2.3) BS01 HEM ? GO:0004601 ... P84479 N/A
    4971 3k9v:A (2.5) BS01 HEM 1.14.15.16 GO:0001649 ... Q09128 19961857
    4972 3k9v:B (2.5) BS01 HEM 1.14.15.16 GO:0001649 ... Q09128 19961857
    4973 3k9y:A (2.8) BS01 HEM 1.14.15.16 GO:0001649 ... Q09128 19961857
    4974 3k9y:B (2.8) BS01 HEM 1.14.15.16 GO:0001649 ... Q09128 19961857
    4975 3k9z:A (1.72) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19940850
    4976 3khm:A (2.85) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488
    4977 3kk6:A (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 19955429
    4978 3kk6:B (2.75) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 19955429
    4979 3kmf:A (2.0) BS01 HEM ? GO:0004601 ... P69905 20230836
    4980 3kmf:C (2.0) BS01 HEM ? GO:0004601 ... P68871 20230836
    4981 3kmf:E (2.0) BS01 HEM ? GO:0004601 ... P69905 20230836
    4982 3kmf:G (2.0) BS01 HEM ? GO:0004601 ... P68871 20230836
    4983 3koh:A (2.9) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018
    4984 3koh:B (2.9) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018
    4985 3krq:A (2.25) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 20461536
    4986 3ks0:A (2.7) BS01 HEM 1.1.2.3 GO:0020037 ... P00175 20546754
    4987 3ks0:B (2.7) BS01 HEM 1.1.2.3 GO:0020037 ... P00175 20546754
    4988 3ks0:H (2.7) BS01 HEM N/A N/A N/A 20546754
    4989 3ks0:K (2.7) BS01 HEM N/A N/A N/A 20546754
    4990 3ksw:A (3.05) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20530488
    4991 3kun:A (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 20606257
    4992 3kun:B (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 20606257
    4993 3kuo:A (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 20606257
    4994 3kuo:B (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 20606257
    4995 3kw4:A (2.67) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 20815363
    4996 3kx3:A (1.803) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779
    4997 3kx3:B (1.803) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779
    4998 3kx4:A (1.95) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779
    4999 3kx4:B (1.95) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779
    5000 3kx5:A (1.686) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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