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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 3ghq:B (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4602 3ghq:C (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4603 3ghq:D (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4604 3ghq:E (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4605 3ghq:F (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4606 3ghq:G (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4607 3ghq:H (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4608 3ghq:I (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4609 3ghq:J (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4610 3ghq:K (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4611 3ghq:L (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4612 3gk9:A (1.8) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 19751675
    4613 3gkt:A (1.86) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 19751675
    4614 3gkv:A (1.4) BS01 HEM ? GO:0004601 ... P80043 19373928
    4615 3gkv:B (1.4) BS01 HEM ? GO:0004601 ... P80044 19373928
    4616 3gln:A (2.26) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 19751675
    4617 3gou:A (3.0) BS01 HEM ? GO:0004601 ... P60529 N/A
    4618 3gou:B (3.0) BS01 HEM ? GO:0004601 ... P60524 N/A
    4619 3gou:C (3.0) BS01 HEM ? GO:0004601 ... P60529 N/A
    4620 3gou:D (3.0) BS01 HEM ? GO:0004601 ... P60524 N/A
    4621 3gph:A (2.7) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018
    4622 3gph:B (2.7) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018
    4623 3gqg:A (1.73) BS01 HEM ? GO:0004601 ... P80043 19651045
    4624 3gqg:B (1.73) BS01 HEM ? GO:0004601 ... P80044 19651045
    4625 3gqg:C (1.73) BS01 HEM ? GO:0004601 ... P80043 19651045
    4626 3gqg:D (1.73) BS01 HEM ? GO:0004601 ... P80044 19651045
    4627 3gqp:A (2.0) BS01 HEM ? GO:0004601 ... P07405 N/A
    4628 3gqp:B (2.0) BS01 HEM ? GO:0004601 ... P07412 N/A
    4629 3gqp:C (2.0) BS01 HEM ? GO:0004601 ... P07405 N/A
    4630 3gqp:D (2.0) BS01 HEM ? GO:0004601 ... P07412 N/A
    4631 3gqr:A (2.4) BS01 HEM ? GO:0004601 ... P07405 N/A
    4632 3gqr:B (2.4) BS01 HEM ? GO:0004601 ... P07412 N/A
    4633 3gqr:C (2.4) BS01 HEM ? GO:0004601 ... P07405 N/A
    4634 3gqr:D (2.4) BS01 HEM ? GO:0004601 ... P07412 N/A
    4635 3gqr:E (2.4) BS01 HEM ? GO:0004601 ... P07405 N/A
    4636 3gqr:F (2.4) BS01 HEM ? GO:0004601 ... P07412 N/A
    4637 3gqr:G (2.4) BS01 HEM ? GO:0004601 ... P07405 N/A
    4638 3gqr:H (2.4) BS01 HEM ? GO:0004601 ... P07412 N/A
    4639 3gvy:A (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q3J696 19968959
    4640 3gvy:B (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q3J696 19968959
    4641 3gvy:C (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q3J696 19968959
    4642 3gw9:A (1.87) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4643 3gw9:B (1.87) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4644 3gw9:C (1.87) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4645 3gw9:D (1.87) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4646 3gys:A (2.9) BS01 HEM ? GO:0004601 ... P07405 N/A
    4647 3gys:B (2.9) BS01 HEM ? GO:0004601 ... P07412 N/A
    4648 3gys:C (2.9) BS01 HEM ? GO:0004601 ... P07405 N/A
    4649 3gys:D (2.9) BS01 HEM ? GO:0004601 ... P07412 N/A
    4650 3gys:E (2.9) BS01 HEM ? GO:0004601 ... P07405 N/A
    4651 3gys:F (2.9) BS01 HEM ? GO:0004601 ... P07412 N/A
    4652 3gys:G (2.9) BS01 HEM ? GO:0004601 ... P07405 N/A
    4653 3gys:H (2.9) BS01 HEM ? GO:0004601 ... P07412 N/A
    4654 3h1h:C (3.16) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4655 3h1h:C (3.16) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4656 3h1h:P (3.16) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4657 3h1h:P (3.16) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4658 3h1i:C (3.53) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4659 3h1i:C (3.53) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4660 3h1i:P (3.53) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4661 3h1i:P (3.53) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4662 3h1j:C (3.0) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4663 3h1j:C (3.0) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4664 3h1j:P (3.0) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4665 3h1j:P (3.0) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4666 3h1k:C (3.48) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 11004461
    4667 3h1k:C (3.48) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 11004461
    4668 3h1k:P (3.48) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 11004461
    4669 3h1k:P (3.48) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 11004461
    4670 3h1l:C (3.21) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 20025846
    4671 3h1l:C (3.21) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 20025846
    4672 3h1l:P (3.21) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 20025846
    4673 3h1l:P (3.21) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 20025846
    4674 3h33:A (2.25) BS01 HEM ? GO:0009055 ... Q74G82 19857457
    4675 3h33:A (2.25) BS02 HEM ? GO:0009055 ... Q74G82 19857457
    4676 3h33:A (2.25) BS03 HEM ? GO:0009055 ... Q74G82 19857457
    4677 3h34:A (1.6) BS01 HEM ? GO:0009055 ... Q74CB4 19857457
    4678 3h34:A (1.6) BS02 HEM ? GO:0009055 ... Q74CB4 19857457
    4679 3h34:A (1.6) BS03 HEM ? GO:0009055 ... Q74CB4 19857457
    4680 3h4n:A (1.35) BS01 HEM ? GO:0009055 ... Q74ED8 19857457
    4681 3h4n:A (1.35) BS02 HEM ? GO:0009055 ... Q74ED8 19857457
    4682 3h4n:A (1.35) BS03 HEM ? GO:0009055 ... Q74ED8 19857457
    4683 3h4n:A (1.35) BS04 HEM ? GO:0009055 ... Q74ED8 19857457
    4684 3h4n:B (1.35) BS01 HEM ? GO:0009055 ... Q74ED8 19857457
    4685 3h4n:B (1.35) BS02 HEM ? GO:0009055 ... Q74ED8 19857457
    4686 3h4n:B (1.35) BS03 HEM ? GO:0009055 ... Q74ED8 19857457
    4687 3h4n:B (1.35) BS04 HEM ? GO:0009055 ... Q74ED8 19857457
    4688 3h57:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19655795
    4689 3h58:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19655795
    4690 3h8t:A (1.8) BS01 HEM ? GO:0046872 ... A2I2W2 19424422
    4691 3h8t:B (1.8) BS01 HEM ? GO:0046872 ... A2I2W2 19424422
    4692 3hb6:A (2.3) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 19394409
    4693 3hc9:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 19924902
    4694 3hcn:A (1.6) BS03 HEM 4.98.1.1 GO:0004325 ... P22830 19703464
    4695 3hcn:B (1.6) BS02 HEM 4.98.1.1 GO:0004325 ... P22830 19703464
    4696 3hco:A (1.8) BS02 HEM 4.98.1.1 GO:0004325 ... P22830 19703464
    4697 3hco:B (1.8) BS02 HEM 4.98.1.1 GO:0004325 ... P22830 19703464
    4698 3hdl:A (1.85) BS01 HEM 1.11.1.7 GO:0004601 ... D1MPT2 19854274
    4699 3hen:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 19924902
    4700 3heo:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 19924902
    4701 3hep:A (1.95) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 19924902
    4702 3hf2:A (2.2) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 19492389
    4703 3hf2:B (2.2) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 19492389
    4704 3hf4:A (2.7) BS01 HEM ? GO:0001540 ... P01946 N/A
    4705 3hf4:B (2.7) BS01 HEM ? GO:0004601 ... P02091 N/A
    4706 3hf4:E (2.7) BS01 HEM ? GO:0001540 ... P01946 N/A
    4707 3hf4:F (2.7) BS01 HEM ? GO:0004601 ... P02091 N/A
    4708 3hhb:A (1.74) BS01 HEM ? GO:0004601 ... P69905 6726807
    4709 3hhb:B (1.74) BS01 HEM ? GO:0004601 ... P68871 6726807
    4710 3hhb:C (1.74) BS01 HEM ? GO:0004601 ... P69905 6726807
    4711 3hhb:D (1.74) BS01 HEM ? GO:0004601 ... P68871 6726807
    4712 3hni:A (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4713 3hni:B (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4714 3hni:C (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4715 3hni:D (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4716 3hni:E (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4717 3hni:F (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4718 3hni:G (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4719 3hni:H (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4720 3hnj:A (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4721 3hnj:B (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4722 3hnj:C (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4723 3hnj:D (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4724 3hnk:A (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4725 3hnk:B (2.1) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4726 3hnl:A (2.2) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4727 3hnl:B (2.2) BS01 HEM ? GO:0005506 ... P0ABE7 20080561
    4728 3hok:A (2.19) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 19601578
    4729 3hok:B (2.19) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 19601578
    4730 3hq6:A (2.0) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4731 3hq6:A (2.0) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4732 3hq6:B (2.0) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4733 3hq6:B (2.0) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4734 3hq7:A (2.31) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4735 3hq7:A (2.31) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4736 3hq8:A (2.4) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4737 3hq8:A (2.4) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4738 3hq8:B (2.4) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4739 3hq8:B (2.4) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4740 3hq9:A (1.52) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4741 3hq9:A (1.52) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4742 3hq9:B (1.52) BS01 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4743 3hq9:B (1.52) BS02 HEM 1.11.1.5 GO:0009055 ... Q749D0 19735665
    4744 3hrw:A (2.8) BS01 HEM ? GO:0001701 ... P01942 33830076
    4745 3hrw:B (2.8) BS01 HEM ? GO:0005344 ... P02088 33830076
    4746 3hrw:C (2.8) BS01 HEM ? GO:0001701 ... P01942 33830076
    4747 3hrw:D (2.8) BS01 HEM ? GO:0005344 ... P02088 33830076
    4748 3hsn:A (1.91) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4749 3hsn:B (1.91) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4750 3hso:A (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4751 3hso:B (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4752 3hsp:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4753 3hsp:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    4754 3hx9:A (1.75) BS01 HEM 1.14.99.57 GO:0004392 ... P9WKH3 19917297
    4755 3hx9:A (1.75) BS03 HEM 1.14.99.57 GO:0004392 ... P9WKH3 19917297
    4756 3hx9:B (1.75) BS01 HEM 1.14.99.57 GO:0004392 ... P9WKH3 19917297
    4757 3hx9:B (1.75) BS02 HEM 1.14.99.57 GO:0004392 ... P9WKH3 19917297
    4758 3hxn:A (2.0) BS01 HEM ? GO:0004601 ... P69905 N/A
    4759 3hxn:B (2.0) BS01 HEM ? GO:0004601 ... P68871 N/A
    4760 3hxn:C (2.0) BS01 HEM ? GO:0004601 ... P69905 N/A
    4761 3hxn:D (2.0) BS01 HEM ? GO:0004601 ... P68871 N/A
    4762 3hyu:A (1.67) BS01 HEM ? GO:0004601 ... P01947 20811494
    4763 3hyu:B (1.67) BS01 HEM ? GO:0004601 ... P02095 20811494
    4764 3i6n:A (2.7) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 19907057
    4765 3i8r:A (1.5) BS01 HEM 1.14.14.18 GO:0004392 ... Q54AI1 20380462
    4766 3i8r:B (1.5) BS01 HEM 1.14.14.18 GO:0004392 ... Q54AI1 20380462
    4767 3i8r:C (1.5) BS01 HEM 1.14.14.18 GO:0004392 ... Q54AI1 20380462
    4768 3i9t:A (2.15) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 20380462
    4769 3i9u:A (2.25) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 20380462
    4770 3ia3:B (3.2) BS01 HEM ? GO:0004601 ... P69905 19706593
    4771 3ia3:B (3.2) BS02 HEM ? GO:0004601 ... P69905 19706593
    4772 3ia3:D (3.2) BS01 HEM ? GO:0004601 ... P69905 19706593
    4773 3ia3:D (3.2) BS02 HEM ? GO:0004601 ... P69905 19706593
    4774 3ia8:A (1.792) BS01 HEM 5.99.-.- N/A Q8WY91 21387410
    4775 3ia8:B (1.792) BS01 HEM 5.99.-.- N/A Q8WY91 21387410
    4776 3ibd:A (2.0) BS01 HEM 1.14.13.- GO:0004497 ... P20813 20061448
    4777 3ic0:A (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    4778 3ic0:B (1.8) BS02 HEM ? GO:0004601 ... P68871 N/A
    4779 3ic0:C (1.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    4780 3ic0:D (1.8) BS03 HEM ? GO:0004601 ... P68871 N/A
    4781 3ic2:A (2.4) BS02 HEM ? GO:0004601 ... P69905 N/A
    4782 3ic2:B (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    4783 3ic2:C (2.4) BS02 HEM ? GO:0004601 ... P69905 N/A
    4784 3ic2:D (2.4) BS02 HEM ? GO:0004601 ... P68871 N/A
    4785 3iq5:A (2.05) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4786 3iq5:B (2.05) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4787 3iq5:C (2.05) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4788 3iq5:D (2.05) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4789 3iq6:A (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4790 3iq6:B (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4791 3iq6:C (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4792 3iq6:D (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4793 3iq6:E (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4794 3iq6:F (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4795 3iq6:G (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4796 3iq6:H (2.35) BS01 HEM ? GO:0005506 ... P0ABE7 20515031
    4797 3iqb:A (2.1) BS01 HEM ? GO:0020037 ... Q8RBX6 20017169
    4798 3ir5:B (2.3) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 20053990
    4799 3ir5:C (2.3) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    4800 3ir5:C (2.3) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 20053990
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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