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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 3e67:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4402 3e68:A (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4403 3e68:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4404 3e6i:A (2.2) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 18818195
    4405 3e6i:B (2.2) BS01 HEM 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 18818195
    4406 3e6l:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4407 3e6l:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4408 3e6n:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4409 3e6n:B (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4410 3e6o:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4411 3e6o:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4412 3e6t:A (2.5) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4413 3e6t:B (2.5) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4414 3e7g:A (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P35228 18849972
    4415 3e7g:B (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P35228 18849972
    4416 3e7g:C (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P35228 18849972
    4417 3e7g:D (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P35228 18849972
    4418 3e7i:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4419 3e7i:B (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4420 3e7m:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4421 3e7m:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4422 3e7t:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4423 3e7t:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4424 3eai:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4425 3eai:B (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4426 3ebd:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4427 3ebd:B (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4428 3ebf:A (2.29) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4429 3ebf:B (2.29) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4430 3ebs:A (2.15) BS01 HEM 1.14.14.- GO:0004497 ... P11509 18779312
    4431 3ebs:B (2.15) BS01 HEM 1.14.14.- GO:0004497 ... P11509 18779312
    4432 3ebs:C (2.15) BS01 HEM 1.14.14.- GO:0004497 ... P11509 18779312
    4433 3ebs:D (2.15) BS01 HEM 1.14.14.- GO:0004497 ... P11509 18779312
    4434 3ecl:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4435 3ecx:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4436 3ecz:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4437 3ed9:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4438 3eda:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4439 3edb:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 19204297
    4440 3eee:A (2.12) BS01 HEM ? GO:0020037 ... Q8RBX6 19032091
    4441 3eee:B (2.12) BS01 HEM ? GO:0020037 ... Q8RBX6 19032091
    4442 3eee:C (2.12) BS01 HEM ? GO:0020037 ... Q8RBX6 19032091
    4443 3eee:D (2.12) BS01 HEM ? GO:0020037 ... Q8RBX6 19032091
    4444 3egw:B (1.9) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 N/A
    4445 3egw:C (1.9) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 N/A
    4446 3egw:C (1.9) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 N/A
    4447 3eh3:A (3.1) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    4448 3eh4:A (2.9) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    4449 3eh5:A (2.8) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 19140675
    4450 3ej6:A (2.3) BS01 HEM 1.11.1.6 GO:0004096 ... Q9C169 19109972
    4451 3ej6:B (2.3) BS01 HEM 1.11.1.6 GO:0004096 ... Q9C169 19109972
    4452 3ej6:C (2.3) BS01 HEM 1.11.1.6 GO:0004096 ... Q9C169 19109972
    4453 3ej6:D (2.3) BS01 HEM 1.11.1.6 GO:0004096 ... Q9C169 19109972
    4454 3ejb:B (2.0) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4455 3ejb:D (2.0) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4456 3ejb:F (2.0) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4457 3ejb:H (2.0) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4458 3ejd:B (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4459 3ejd:D (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4460 3ejd:F (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4461 3ejd:H (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4462 3eje:B (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4463 3eje:D (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4464 3eje:F (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4465 3eje:H (2.1) BS02 HEM 1.14.14.46 GO:0004497 ... P53554 18838690
    4466 3ekb:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4467 3ekb:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4468 3ekd:A (2.5) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4469 3ekd:B (2.5) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4470 3ekf:A (2.1) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4471 3ekf:B (2.1) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18721129
    4472 3el3:A (3.3) BS01 HEM 1.14.15.39
    4.2.3.47    		 GO:0004497 ... Q9K498 19858213
    4473 3el3:B (3.3) BS01 HEM 1.14.15.39
    4.2.3.47    		 GO:0004497 ... Q9K498 19858213
    4474 3ell:A (1.7) BS01 HEM ? GO:0046872 ... O69756 19072037
    4475 3ell:A (1.7) BS02 HEM ? GO:0046872 ... O69756 19072037
    4476 3ell:B (1.7) BS01 HEM ? GO:0046872 ... O69756 19072037
    4477 3emm:A (1.358) BS01 HEM 5.99.-.- GO:0003674 ... O64527 19938152
    4478 3eok:A (2.1) BS01 HEM ? GO:0004601 ... P01986 N/A
    4479 3eok:B (2.1) BS01 HEM ? GO:0004601 ... P02114 N/A
    4480 3eqm:A (2.9) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 19129847
    4481 3erh:A (2.4) BS01 HEM 1.11.1.7 GO:0004601 ... A5JUY8 19339248
    4482 3eri:A (2.5) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 19339248
    4483 3eu1:A (3.0) BS01 HEM ? GO:0004601 ... P0CH25 19356147
    4484 3eu1:B (3.0) BS01 HEM ? GO:0004601 ... P02077 19356147
    4485 3eu1:C (3.0) BS01 HEM ? GO:0004601 ... P0CH25 19356147
    4486 3eu1:D (3.0) BS01 HEM ? GO:0004601 ... P02077 19356147
    4487 3exb:A (1.6) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 19072042
    4488 3f9p:A (2.93) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 19608745
    4489 3f9p:B (2.93) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 19608745
    4490 3f9p:C (2.93) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 19608745
    4491 3f9p:D (2.93) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 19608745
    4492 3faq:A (2.7) BS01 HEM 1.11.1.7 GO:0004601 ... A5JUY8 19339248
    4493 3fc5:A (2.59) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    4494 3fc5:B (2.59) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    4495 3fh9:A (1.62) BS01 HEM ? GO:0004601 ... D0VX09 N/A
    4496 3fh9:B (1.62) BS01 HEM ? GO:0004601 ... D0VX08 N/A
    4497 3fjw:A (2.8) BS03 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4498 3fjw:B (2.8) BS04 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4499 3fkg:A (1.81) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4500 3fll:A (1.5) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 19175316
    4501 3fm1:A (1.78) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4502 3fm4:A (2.11) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4503 3fm6:A (1.13) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4504 3fmu:A (1.04) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 N/A
    4505 3fnl:A (2.48) BS02 HEM 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    4506 3foo:A (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4507 3foo:B (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4508 3foo:C (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4509 3foo:D (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4510 3foo:E (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4511 3foo:F (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4512 3foo:G (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4513 3foo:H (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4514 3foo:I (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4515 3foo:J (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4516 3foo:K (2.4) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4517 3foo:L (2.4) BS02 HEM ? GO:0005506 ... P0ABE7 19527025
    4518 3fop:A (3.0) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4519 3fop:B (3.0) BS01 HEM ? GO:0005506 ... P0ABE7 19527025
    4520 3fs4:A (2.22) BS01 HEM ? GO:0004601 ... P01981 33950023
    4521 3fs4:B (2.22) BS01 HEM ? GO:0004601 ... P02123 33950023
    4522 3fs4:C (2.22) BS01 HEM ? GO:0004601 ... P01981 33950023
    4523 3fs4:D (2.22) BS01 HEM ? GO:0004601 ... P02123 33950023
    4524 3fvb:A (1.806) BS01 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    4525 3fvb:B (1.806) BS01 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    4526 3fwf:A (1.83) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4527 3fwf:B (1.83) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4528 3fwg:A (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4529 3fwg:B (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4530 3fwi:A (2.4) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4531 3fwj:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19293375
    4532 3g1q:A (1.89) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4533 3g1q:B (1.89) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4534 3g1q:C (1.89) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4535 3g1q:D (1.89) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 19923211
    4536 3g46:A (0.91) BS01 HEM ? GO:0001666 ... P02213 19913484
    4537 3g46:A (0.91) BS05 HEM ? GO:0001666 ... P02213 19913484
    4538 3g46:B (0.91) BS01 HEM ? GO:0001666 ... P02213 19913484
    4539 3g4q:A (1.6) BS01 HEM ? GO:0001666 ... P02213 19913484
    4540 3g4q:A (1.6) BS04 HEM ? GO:0001666 ... P02213 19913484
    4541 3g4q:B (1.6) BS01 HEM ? GO:0001666 ... P02213 19913484
    4542 3g4r:A (1.6) BS01 HEM ? GO:0001666 ... P02213 19913484
    4543 3g4r:A (1.6) BS04 HEM ? GO:0001666 ... P02213 19913484
    4544 3g4r:B (1.6) BS01 HEM ? GO:0001666 ... P02213 19913484
    4545 3g4u:A (2.1) BS01 HEM ? GO:0001666 ... P02213 19913484
    4546 3g4u:A (2.1) BS04 HEM ? GO:0001666 ... P02213 19913484
    4547 3g4u:B (2.1) BS01 HEM ? GO:0001666 ... P02213 19913484
    4548 3g4u:B (2.1) BS02 HEM ? GO:0001666 ... P02213 19913484
    4549 3g4v:A (2.1) BS01 HEM ? GO:0001666 ... P02213 19913484
    4550 3g4v:A (2.1) BS04 HEM ? GO:0001666 ... P02213 19913484
    4551 3g4v:B (2.1) BS01 HEM ? GO:0001666 ... P02213 19913484
    4552 3g4v:B (2.1) BS02 HEM ? GO:0001666 ... P02213 19913484
    4553 3g4w:A (1.9) BS01 HEM ? GO:0001666 ... P02213 19913484
    4554 3g4w:A (1.9) BS04 HEM ? GO:0001666 ... P02213 19913484
    4555 3g4w:B (1.9) BS01 HEM ? GO:0001666 ... P02213 19913484
    4556 3g4w:B (1.9) BS02 HEM ? GO:0001666 ... P02213 19913484
    4557 3g4y:A (1.7) BS01 HEM ? GO:0001666 ... P02213 19913484
    4558 3g4y:A (1.7) BS04 HEM ? GO:0001666 ... P02213 19913484
    4559 3g4y:B (1.7) BS01 HEM ? GO:0001666 ... P02213 19913484
    4560 3g4y:B (1.7) BS02 HEM ? GO:0001666 ... P02213 19913484
    4561 3g52:A (1.65) BS01 HEM ? GO:0001666 ... P02213 19913484
    4562 3g52:A (1.65) BS04 HEM ? GO:0001666 ... P02213 19913484
    4563 3g52:B (1.65) BS01 HEM ? GO:0001666 ... P02213 19913484
    4564 3g52:B (1.65) BS02 HEM ? GO:0001666 ... P02213 19913484
    4565 3g53:A (1.64) BS01 HEM ? GO:0001666 ... P02213 19913484
    4566 3g53:A (1.64) BS04 HEM ? GO:0001666 ... P02213 19913484
    4567 3g53:B (1.64) BS01 HEM ? GO:0001666 ... P02213 19913484
    4568 3g53:B (1.64) BS02 HEM ? GO:0001666 ... P02213 19913484
    4569 3g5f:A (1.4) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 19416919
    4570 3g5h:A (1.4) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 19416919
    4571 3g5n:A (2.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4572 3g5n:B (2.5) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4573 3g5n:C (2.5) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4574 3g5n:D (2.5) BS05 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4575 3g93:A (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4576 3g93:B (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4577 3g93:B (3.2) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4578 3g93:C (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4579 3g93:D (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    4580 3gas:A (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4581 3gas:A (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4582 3gas:B (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4583 3gas:B (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4584 3gas:C (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4585 3gas:C (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4586 3gas:D (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4587 3gas:D (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4588 3gas:E (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4589 3gas:E (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4590 3gas:F (1.8) BS01 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4591 3gas:F (1.8) BS02 HEM 1.14.99.3 GO:0005829 ... C0LU01 N/A
    4592 3gc1:A (2.5) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 19907057
    4593 3gcj:A (2.34) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    4594 3gck:A (2.9) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    4595 3gcl:A (2.5) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 19465478
    4596 3gdj:A (2.0) BS01 HEM ? GO:0004601 ... P63106 N/A
    4597 3gdj:B (2.0) BS01 HEM ? GO:0004601 ... P68231 N/A
    4598 3gdj:C (2.0) BS01 HEM ? GO:0004601 ... P63106 N/A
    4599 3gdj:D (2.0) BS01 HEM ? GO:0004601 ... P68231 N/A
    4600 3ghq:A (2.7) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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