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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 3cxy:A (1.45) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    4202 3cxz:A (1.08) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    4203 3cy0:A (1.9) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    4204 3cy1:A (1.75) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    4205 3cy5:A (2.0) BS01 HEM ? GO:0004601 ... Q9TSN8 N/A
    4206 3cy5:B (2.0) BS01 HEM ? GO:0004601 ... P67820 N/A
    4207 3cy5:C (2.0) BS01 HEM ? GO:0004601 ... Q9TSN8 N/A
    4208 3cy5:D (2.0) BS01 HEM ? GO:0004601 ... P67820 N/A
    4209 3cyr:A (1.6) BS01 HEM ? GO:0009055 ... Q9L915 N/A
    4210 3cyr:A (1.6) BS02 HEM ? GO:0009055 ... Q9L915 N/A
    4211 3cyr:A (1.6) BS03 HEM ? GO:0009055 ... Q9L915 N/A
    4212 3cyr:A (1.6) BS04 HEM ? GO:0009055 ... Q9L915 N/A
    4213 3czh:A (2.3) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    4214 3czh:B (2.3) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    4215 3czy:A (1.54) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 18798608
    4216 3czy:B (1.54) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 18798608
    4217 3d17:A (2.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    4218 3d17:B (2.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    4219 3d17:C (2.8) BS01 HEM ? GO:0004601 ... P69905 N/A
    4220 3d17:D (2.8) BS01 HEM ? GO:0004601 ... P68871 N/A
    4221 3d1a:A (2.61) BS01 HEM ? GO:0004601 ... P0CH25 N/A
    4222 3d1a:B (2.61) BS01 HEM ? GO:0004601 ... P02077 N/A
    4223 3d1a:C (2.61) BS01 HEM ? GO:0004601 ... P0CH25 N/A
    4224 3d1a:D (2.61) BS01 HEM ? GO:0004601 ... P02077 N/A
    4225 3d1k:A (1.25) BS01 HEM ? GO:0004601 ... P45718 18642904
    4226 3d1k:B (1.25) BS01 HEM ? GO:0004601 ... P45720 18642904
    4227 3d4x:A (2.2) BS01 HEM ? GO:0004601 ... P07405 N/A
    4228 3d4x:B (2.2) BS01 HEM ? GO:0004601 ... P07412 N/A
    4229 3d4x:C (2.2) BS01 HEM ? GO:0004601 ... P07405 N/A
    4230 3d4x:D (2.2) BS01 HEM ? GO:0004601 ... P07412 N/A
    4231 3d7o:A (1.8) BS02 HEM ? GO:0004601 ... P69905 18630930
    4232 3d7o:B (1.8) BS02 HEM ? GO:0004601 ... P68871 18630930
    4233 3dam:A (2.4) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    4234 3dan:A (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    4235 3dax:A (2.15) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    4236 3dax:B (2.15) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    4237 3dbg:A (2.6) BS01 HEM 1.14.15.39
    4.2.3.47
    GO:0004497 ... Q9K498 19858213
    4238 3dbg:B (2.6) BS01 HEM 1.14.15.39
    4.2.3.47
    GO:0004497 ... Q9K498 19858213
    4239 3dbm:A (2.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    4240 3ddr:A (2.8) BS01 HEM ? GO:0005515 ... Q79AD2 19144921
    4241 3ddr:B (2.8) BS01 HEM ? GO:0005515 ... Q79AD2 19144921
    4242 3ddr:C (2.8) BS01 HEM ? GO:0005515 ... Q54450 19144921
    4243 3ddr:D (2.8) BS01 HEM ? GO:0005515 ... Q54450 19144921
    4244 3de8:A (1.72) BS04 HEM ? GO:0005506 ... P0ABE7 19267481
    4245 3de8:B (1.72) BS05 HEM ? GO:0005506 ... P0ABE7 19267481
    4246 3de8:C (1.72) BS04 HEM ? GO:0005506 ... P0ABE7 19267481
    4247 3de8:D (1.72) BS03 HEM ? GO:0005506 ... P0ABE7 19267481
    4248 3de9:A (2.04) BS01 HEM ? GO:0005506 ... P0ABE7 19267481
    4249 3dgi:A (1.95) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    4250 3dgi:B (1.95) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    4251 3dhr:A (2.0) BS01 HEM ? GO:0004601 ... P21871 N/A
    4252 3dhr:B (2.0) BS01 HEM ? GO:0004601 ... P11342 N/A
    4253 3dhr:C (2.0) BS01 HEM ? GO:0004601 ... P21871 N/A
    4254 3dhr:D (2.0) BS01 HEM ? GO:0004601 ... P11342 N/A
    4255 3dhr:E (2.0) BS01 HEM ? GO:0004601 ... P21871 N/A
    4256 3dhr:F (2.0) BS01 HEM ? GO:0004601 ... P11342 N/A
    4257 3dhr:G (2.0) BS01 HEM ? GO:0004601 ... P21871 N/A
    4258 3dhr:H (2.0) BS01 HEM ? GO:0004601 ... P11342 N/A
    4259 3dht:A (2.98) BS01 HEM ? GO:0001540 ... P01946 N/A
    4260 3dht:B (2.98) BS01 HEM ? GO:0004601 ... P02091 N/A
    4261 3dl9:A (2.721) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    4262 3dl9:B (2.721) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    4263 3dqr:A (2.4) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4264 3dqr:B (2.4) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4265 3dqs:A (2.03) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 19296678
    4266 3dqs:B (2.03) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 19296678
    4267 3dqt:A (2.54) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 19296678
    4268 3dqt:B (2.54) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 19296678
    4269 3dr0:A (1.23) BS01 HEM ? GO:0005506 ... O30881 19678839
    4270 3dr0:B (1.23) BS01 HEM ? GO:0005506 ... O30881 19678839
    4271 3dr0:C (1.23) BS01 HEM ? GO:0005506 ... O30881 19678839
    4272 3dr9:A (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 19153464
    4273 3dr9:B (1.26) BS01 HEM ? GO:0004601 ... Q9NAV8 19153464
    4274 3dsi:A (1.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4275 3dsi:B (1.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4276 3dsj:A (1.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4277 3dsj:B (1.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4278 3dsk:A (1.55) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4279 3dsk:B (1.55) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4280 3dut:A (1.55) BS01 HEM ? GO:0004601 ... P69905 N/A
    4281 3dut:B (1.55) BS01 HEM ? GO:0004601 ... P68871 N/A
    4282 3dut:C (1.55) BS01 HEM ? GO:0004601 ... P69905 N/A
    4283 3dut:D (1.55) BS01 HEM ? GO:0004601 ... P68871 N/A
    4284 3dwj:A (2.75) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18815130
    4285 3dwj:B (2.75) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18815130
    4286 3dy5:A (3.51) BS02 HEM 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 18785758
    4287 3dy5:C (3.51) BS02 HEM 1.13.11.40
    4.2.1.-
    GO:0005506 ... O16025 18785758
    4288 3e08:A (1.9) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4289 3e08:B (1.9) BS01 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4290 3e08:C (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4291 3e08:D (1.9) BS04 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4292 3e08:E (1.9) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4293 3e08:F (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4294 3e08:G (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4295 3e08:H (1.9) BS04 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4296 3e1j:A (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4297 3e1j:B (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4298 3e1j:C (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4299 3e1j:D (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4300 3e1j:E (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4301 3e1j:F (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4302 3e1j:G (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4303 3e1j:H (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4304 3e1j:I (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4305 3e1j:J (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4306 3e1j:K (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4307 3e1j:L (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4308 3e1l:A (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4309 3e1l:B (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4310 3e1l:C (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4311 3e1l:D (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4312 3e1l:E (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4313 3e1l:F (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4314 3e1l:G (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4315 3e1l:H (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4316 3e1l:I (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4317 3e1l:J (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4318 3e1l:K (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4319 3e1l:L (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4320 3e1m:A (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4321 3e1m:B (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4322 3e1m:C (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4323 3e1m:D (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4324 3e1m:E (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4325 3e1m:F (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4326 3e1m:G (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4327 3e1m:H (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4328 3e1m:I (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4329 3e1m:J (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4330 3e1m:K (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4331 3e1m:L (2.7) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4332 3e1n:A (2.8) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4333 3e1n:B (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4334 3e1n:C (2.8) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4335 3e1n:D (2.8) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4336 3e1n:E (2.8) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4337 3e1n:F (2.8) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4338 3e1n:G (2.8) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4339 3e1n:H (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4340 3e1n:I (2.8) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4341 3e1n:J (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4342 3e1n:K (2.8) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4343 3e1n:L (2.8) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4344 3e1o:A (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4345 3e1o:B (2.95) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4346 3e1o:C (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4347 3e1o:D (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4348 3e1o:E (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4349 3e1o:F (2.95) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4350 3e1o:G (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4351 3e1o:H (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4352 3e1o:I (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4353 3e1o:J (2.95) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4354 3e1o:K (2.95) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4355 3e1o:L (2.95) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4356 3e1p:A (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4357 3e1p:B (2.4) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4358 3e1p:C (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4359 3e1p:D (2.4) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4360 3e1p:E (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4361 3e1p:F (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4362 3e1p:G (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4363 3e1p:H (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4364 3e1p:I (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4365 3e1p:J (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4366 3e1p:K (2.4) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4367 3e1p:L (2.4) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    4368 3e1q:A (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4369 3e1q:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4370 3e1q:C (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4371 3e1q:D (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4372 3e1q:E (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4373 3e1q:F (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4374 3e1q:G (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4375 3e1q:H (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4376 3e1q:I (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4377 3e1q:J (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4378 3e1q:K (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4379 3e1q:L (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19705876
    4380 3e2c:A (1.8) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    4381 3e2c:A (1.8) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    4382 3e2c:B (1.8) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    4383 3e2c:B (1.8) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    4384 3e2n:A (1.3) BS01 HEM 1.11.1.11
    1.11.1.5
    GO:0004601 ... P00431
    P48534
    18771292
    4385 3e2o:A (1.06) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 18771292
    4386 3e4e:A (2.6) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 18818195
    4387 3e4e:B (2.6) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 18818195
    4388 3e4n:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    4389 3e4w:A (1.8) BS01 HEM 1.11.1.- GO:0004096 ... Q73WB6 19827095
    4390 3e4w:B (1.8) BS01 HEM 1.11.1.- GO:0004096 ... Q73WB6 19827095
    4391 3e4y:A (2.6) BS01 HEM 1.11.1.- GO:0004096 ... Q73WB6 19827095
    4392 3e55:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    4393 3e5i:A (1.22) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    4394 3e5j:A (1.95) BS01 HEM ? GO:0004497 ... Q93H81 19074393
    4395 3e5k:A (2.6) BS01 HEM ? GO:0004497 ... Q93H81 19074393
    4396 3e5l:A (2.4) BS01 HEM ? GO:0004497 ... Q93H81 19074393
    4397 3e5o:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    4398 3e65:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4399 3e65:B (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972
    4400 3e67:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 18849972

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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