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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 3aee:C (3.22) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    4002 3aee:D (3.22) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    4003 3aef:C (2.8) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    4004 3aef:D (2.8) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    4005 3aeg:C (3.27) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    4006 3aeg:D (3.27) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    4007 3afv:A (1.4) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    4008 3ag0:A (2.6) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 21254233
    4009 3aq5:A (1.78) BS01 HEM ? GO:0005344 ... P17724 21298303
    4010 3aq5:B (1.78) BS01 HEM ? GO:0005344 ... P17724 21298303
    4011 3aq6:A (1.93) BS01 HEM ? GO:0005344 ... P17724 21298303
    4012 3aq6:B (1.93) BS01 HEM ? GO:0005344 ... P17724 21298303
    4013 3aq7:A (1.77) BS01 HEM ? GO:0005344 ... P17724 21298303
    4014 3aq7:B (1.77) BS01 HEM ? GO:0005344 ... P17724 21298303
    4015 3aq8:A (1.83) BS01 HEM ? GO:0005344 ... P17724 21298303
    4016 3aq8:B (1.83) BS01 HEM ? GO:0005344 ... P17724 21298303
    4017 3aq9:A (1.74) BS01 HEM ? GO:0005344 ... P17724 21298303
    4018 3aq9:B (1.74) BS01 HEM ? GO:0005344 ... P17724 21298303
    4019 3arj:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 21543852
    4020 3ark:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 21543852
    4021 3arl:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 21543852
    4022 3at5:A (2.2) BS01 HEM ? GO:0004601 ... E5RWQ0 21445850
    4023 3at5:B (2.2) BS01 HEM ? GO:0004601 ... E5RWQ1 21445850
    4024 3at6:A (2.35) BS01 HEM ? GO:0004601 ... E5RWQ0 21445850
    4025 3at6:B (2.35) BS01 HEM ? GO:0004601 ... E5RWQ1 21445850
    4026 3atj:A (2.2) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    4027 3atj:B (2.2) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    4028 3awm:A (1.65) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 21719702
    4029 3awp:A (1.8) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 21719702
    4030 3awq:A (1.9) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 21719702
    4031 3ayf:A (2.5) BS01 HEM ? GO:0004129 ... B3Y963 22266822
    4032 3ayf:A (2.5) BS02 HEM ? GO:0004129 ... B3Y963 22266822
    4033 3ayg:A (2.7) BS01 HEM ? GO:0004129 ... B3Y963 22266822
    4034 3ayg:A (2.7) BS02 HEM ? GO:0004129 ... B3Y963 22266822
    4035 3b3m:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 18321097
    4036 3b3m:B (1.95) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 18321097
    4037 3b3n:A (1.98) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 18321097
    4038 3b3n:B (1.98) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 18321097
    4039 3b3o:A (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4040 3b3o:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4041 3b3p:A (2.45) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4042 3b3p:B (2.45) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 19296678
    4043 3b42:A (1.9) BS01 HEM ? N/A Q74EM7 18329666
    4044 3b42:A (1.9) BS02 HEM ? N/A Q74EM7 18329666
    4045 3b42:B (1.9) BS01 HEM ? N/A Q74EM7 18329666
    4046 3b42:B (1.9) BS02 HEM ? N/A Q74EM7 18329666
    4047 3b47:A (2.0) BS01 HEM ? N/A Q74FM4 18329666
    4048 3b4x:A (1.94) BS01 HEM 1.14.-.- GO:0004497 ... Q972I2 N/A
    4049 3b6h:A (1.62) BS02 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... Q16647 18032380
    4050 3b6h:B (1.62) BS02 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... Q16647 18032380
    4051 3b75:A (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    4052 3b75:B (2.3) BS02 HEM ? GO:0004601 ... P68871 N/A
    4053 3b75:C (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    4054 3b75:D (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    4055 3b75:E (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    4056 3b75:F (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    4057 3b75:G (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    4058 3b75:H (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    4059 3b75:S (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    4060 3b75:T (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    4061 3b98:A (2.08) BS01 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... F1RE08 18032380
    4062 3b98:B (2.08) BS01 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... F1RE08 18032380
    4063 3b99:A (2.5) BS01 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... F1RE08 18032380
    4064 3b99:B (2.5) BS01 HEM 4.2.1.152
    5.3.99.4    		 GO:0001516 ... F1RE08 18032380
    4065 3bcc:C (3.7) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4066 3bcc:C (3.7) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    4067 3bcc:D (3.7) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 9565029
    4068 3bcq:A (2.4) BS01 HEM ? GO:0004601 ... A1YZP4 N/A
    4069 3bcq:B (2.4) BS01 HEM ? GO:0004601 ... D0VWS2 N/A
    4070 3bcq:C (2.4) BS01 HEM ? GO:0004601 ... A1YZP4 N/A
    4071 3bcq:D (2.4) BS01 HEM ? GO:0004601 ... D0VWS2 N/A
    4072 3bdz:A (2.0) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 18270198
    4073 3bdz:B (2.0) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 18270198
    4074 3be0:A (3.05) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 18270198
    4075 3be0:B (3.05) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 18270198
    4076 3ben:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18298086
    4077 3ben:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18298086
    4078 3bj1:A (1.9) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4079 3bj1:B (1.9) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4080 3bj1:C (1.9) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4081 3bj1:D (1.9) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4082 3bj2:A (2.0) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4083 3bj2:B (2.0) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4084 3bj2:C (2.0) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4085 3bj2:D (2.0) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4086 3bj3:A (2.1) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4087 3bj3:B (2.1) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4088 3bj3:C (2.1) BS01 HEM ? GO:0004601 ... D0VWS3 18831041
    4089 3bj3:D (2.1) BS01 HEM ? GO:0004601 ... D0VWV3 18831041
    4090 3bk9:A (2.15) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4091 3bk9:B (2.15) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4092 3bk9:C (2.15) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4093 3bk9:D (2.15) BS04 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4094 3bk9:E (2.15) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4095 3bk9:F (2.15) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4096 3bk9:G (2.15) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4097 3bk9:H (2.15) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    4098 3bkn:A (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4099 3bkn:B (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4100 3bkn:C (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4101 3bkn:D (2.72) BS01 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4102 3bkn:E (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4103 3bkn:F (2.72) BS01 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4104 3bkn:G (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4105 3bkn:H (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4106 3bkn:I (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4107 3bkn:J (2.72) BS01 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4108 3bkn:K (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4109 3bkn:L (2.72) BS03 HEM 1.16.3.1 GO:0004322 ... A0QY79 18445621
    4110 3bnf:A (1.7) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4111 3bnf:A (1.7) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4112 3bnf:A (1.7) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4113 3bnf:A (1.7) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4114 3bnf:A (1.7) BS07 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4115 3bng:A (1.5) BS02 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4116 3bng:A (1.5) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4117 3bng:A (1.5) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4118 3bng:A (1.5) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4119 3bng:A (1.5) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4120 3bnh:A (1.75) BS02 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4121 3bnh:A (1.75) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4122 3bnh:A (1.75) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4123 3bnh:A (1.75) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4124 3bnh:A (1.75) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4125 3bnj:A (1.3) BS03 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4126 3bnj:A (1.3) BS04 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4127 3bnj:A (1.3) BS05 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4128 3bnj:A (1.3) BS06 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4129 3bnj:A (1.3) BS07 HEM 1.7.2.2 GO:0005509 ... Q9S1E5 18201106
    4130 3bom:A (1.35) BS01 HEM ? GO:0004601 ... P14527 N/A
    4131 3bom:B (1.35) BS01 HEM ? GO:0004601 ... P02141 N/A
    4132 3bom:C (1.35) BS01 HEM ? GO:0004601 ... P14527 N/A
    4133 3bom:D (1.35) BS01 HEM ? GO:0004601 ... P02141 N/A
    4134 3buj:A (2.47) BS01 HEM ? GO:0004497 ... Q8KND6 18561189
    4135 3bvd:A (3.37) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 18376849
    4136 3bxi:A (2.3) BS03 HEM 1.11.1.7 GO:0004601 ... P80025 19167310
    4137 3bxu:A (1.35) BS01 HEM ? GO:0009055 ... Q74G83 18534185
    4138 3bxu:A (1.35) BS02 HEM ? GO:0009055 ... Q74G83 18534185
    4139 3bxu:A (1.35) BS03 HEM ? GO:0009055 ... Q74G83 18534185
    4140 3bxu:B (1.35) BS01 HEM ? GO:0009055 ... Q74G83 18534185
    4141 3bxu:B (1.35) BS02 HEM ? GO:0009055 ... Q74G83 18534185
    4142 3bxu:B (1.35) BS03 HEM ? GO:0009055 ... Q74G83 18534185
    4143 3c2c:A (1.68) BS01 HEM ? GO:0009055 ... P0C189 N/A
    4144 3c62:A (1.87) BS02 HEM ? GO:0005506 ... P0ABE7 18422313
    4145 3c62:B (1.87) BS03 HEM ? GO:0005506 ... P0ABE7 18422313
    4146 3c62:C (1.87) BS02 HEM ? GO:0005506 ... P0ABE7 18422313
    4147 3c62:D (1.87) BS03 HEM ? GO:0005506 ... P0ABE7 18422313
    4148 3c63:A (1.75) BS02 HEM ? GO:0005506 ... P0ABE7 18422313
    4149 3c63:B (1.75) BS03 HEM ? GO:0005506 ... P0ABE7 18422313
    4150 3c63:C (1.75) BS02 HEM ? GO:0005506 ... P0ABE7 18422313
    4151 3c63:D (1.75) BS03 HEM ? GO:0005506 ... P0ABE7 18422313
    4152 3c6g:A (2.8) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 18511070
    4153 3c6g:B (2.8) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 18511070
    4154 3c76:X (1.07) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 N/A
    4155 3cao:A (1.6) BS02 HEM ? GO:0009055 ... P94690 10398589
    4156 3cao:A (1.6) BS03 HEM ? GO:0009055 ... P94690 10398589
    4157 3cao:A (1.6) BS04 HEM ? GO:0009055 ... P94690 10398589
    4158 3cao:A (1.6) BS05 HEM ? GO:0009055 ... P94690 10398589
    4159 3car:A (1.9) BS01 HEM ? GO:0009055 ... P94690 10398589
    4160 3car:A (1.9) BS02 HEM ? GO:0009055 ... P94690 10398589
    4161 3car:A (1.9) BS03 HEM ? GO:0009055 ... P94690 10398589
    4162 3car:A (1.9) BS04 HEM ? GO:0009055 ... P94690 10398589
    4163 3cbd:A (2.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    4164 3cbd:B (2.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    4165 3ccp:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 2169873
    4166 3ccx:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8664277
    4167 3ciu:A (3.5) BS01 HEM ? GO:0004601 ... P01966 N/A
    4168 3ciu:B (3.5) BS01 HEM ? GO:0004601 ... P02070 N/A
    4169 3ciu:C (3.5) BS01 HEM ? GO:0004601 ... P01966 N/A
    4170 3ciu:D (3.5) BS01 HEM ? GO:0004601 ... P02070 N/A
    4171 3cli:A (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4172 3cli:B (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    4173 3cp4:A (2.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 1742281
    4174 3cpp:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2611203
    4175 3cqv:A (1.9) BS01 HEM ? GO:0003677 ... Q14995 19243223
    4176 3csl:A (2.7) BS01 HEM ? GO:0005515 ... Q79AD2 19144921
    4177 3csl:B (2.7) BS01 HEM ? GO:0005515 ... Q79AD2 19144921
    4178 3cu4:A (1.3) BS01 HEM ? GO:0005506 ... Q74AE4 18837462
    4179 3cv8:A (2.0) BS01 HEM 1.14.15.22 GO:0004497 ... P18326 18937506
    4180 3cv9:A (1.7) BS01 HEM 1.14.15.22 GO:0004497 ... P18326 18937506
    4181 3cwb:C (3.51) BS01 HEM ? GO:0005737 ... P18946 18996700
    4182 3cwb:C (3.51) BS02 HEM ? GO:0005737 ... P18946 18996700
    4183 3cwb:P (3.51) BS02 HEM ? GO:0005737 ... P18946 18996700
    4184 3cwb:P (3.51) BS03 HEM ? GO:0005737 ... P18946 18996700
    4185 3cx5:C (1.9) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4186 3cx5:C (1.9) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4187 3cx5:D (1.9) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    4188 3cx5:N (1.9) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4189 3cx5:N (1.9) BS03 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4190 3cx5:O (1.9) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    4191 3cx5:W (1.9) BS01 HEM ? GO:0005515 ... P00044 18390544
    4192 3cxh:C (2.5) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4193 3cxh:C (2.5) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4194 3cxh:D (2.5) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    4195 3cxh:N (2.5) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4196 3cxh:N (2.5) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    4197 3cxh:O (2.5) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    4198 3cxh:W (2.5) BS01 HEM ? GO:0005739 ... P00045 18390544
    4199 3cxv:A (1.7) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 18818197
    4200 3cxx:A (1.9) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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