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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 3h1h:Q (3.16) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    1402 3h1i:D (3.53) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    1403 3h1i:Q (3.53) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    1404 3h1j:D (3.0) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    1405 3h1j:Q (3.0) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    1406 3h1k:D (3.48) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 11004461
    1407 3h1k:Q (3.48) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 11004461
    1408 3h1l:D (3.21) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 20025846
    1409 3h1l:Q (3.21) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 20025846
    1410 3l1t:A (2.3) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1411 3l1t:A (2.3) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1412 3l1t:A (2.3) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1413 3l1t:A (2.3) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1414 3l1t:A (2.3) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1415 3l1t:A (2.3) BS08 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1416 3l1t:B (2.3) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1417 3l1t:B (2.3) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1418 3l1t:B (2.3) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1419 3l1t:B (2.3) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1420 3l1t:B (2.3) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1421 3l1t:C (2.3) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1422 3l1t:C (2.3) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1423 3l1t:C (2.3) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1424 3l1t:C (2.3) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1425 3l1t:C (2.3) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1426 3l1t:C (2.3) BS08 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1427 3l1t:D (2.3) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1428 3l1t:D (2.3) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1429 3l1t:D (2.3) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1430 3l1t:D (2.3) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1431 3l1t:D (2.3) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 20629638
    1432 3l4m:A (2.02) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1433 3l4m:A (2.02) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1434 3l4m:B (2.02) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1435 3l4m:B (2.02) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1436 3l4o:A (2.046) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1437 3l4o:A (2.046) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1438 3l4o:B (2.046) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1439 3l4o:B (2.046) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20223990
    1440 3l70:D (2.75) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1441 3l70:Q (2.75) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1442 3l71:D (2.84) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1443 3l71:Q (2.84) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1444 3l72:D (3.06) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1445 3l72:Q (3.06) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1446 3l73:D (3.04) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1447 3l73:Q (3.04) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1448 3l74:D (2.76) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1449 3l74:Q (2.76) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1450 3l75:D (2.79) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1451 3l75:Q (2.79) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    1452 3lg1:A (1.95) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1453 3lg1:A (1.95) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1454 3lg1:A (1.95) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1455 3lg1:A (1.95) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1456 3lg1:A (1.95) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1457 3lg1:A (1.95) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1458 3lg1:A (1.95) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1459 3lg1:A (1.95) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1460 3lg1:B (1.95) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1461 3lg1:B (1.95) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1462 3lg1:B (1.95) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1463 3lg1:B (1.95) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1464 3lg1:B (1.95) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1465 3lg1:B (1.95) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1466 3lg1:B (1.95) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1467 3lg1:B (1.95) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1468 3lgq:A (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1469 3lgq:A (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1470 3lgq:A (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1471 3lgq:A (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1472 3lgq:A (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1473 3lgq:A (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1474 3lgq:A (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1475 3lgq:A (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1476 3lgq:B (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1477 3lgq:B (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1478 3lgq:B (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1479 3lgq:B (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1480 3lgq:B (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1481 3lgq:B (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1482 3lgq:B (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1483 3lgq:B (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    1484 3m97:X (1.332) BS01 HEC ? GO:0009055 ... P54820 20606266
    1485 3mk7:B (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    1486 3mk7:C (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    1487 3mk7:C (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    1488 3mk7:E (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    1489 3mk7:E (3.2) BS02 HEC ? GO:0009055 ... D9IA44 20576851
    1490 3mk7:F (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    1491 3mk7:F (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    1492 3mk7:H (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    1493 3mk7:I (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    1494 3mk7:I (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    1495 3mk7:L (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    1496 3mk7:M (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    1497 3mk7:M (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    1498 3ml1:A (1.6) BS04 HEC 1.9.6.1 GO:0005506 ... P39185 21419779
    1499 3ml1:B (1.6) BS01 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    1500 3ml1:B (1.6) BS02 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    1501 3mmo:A (1.55) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1502 3mmo:A (1.55) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1503 3mmo:A (1.55) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1504 3mmo:A (1.55) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1505 3mmo:A (1.55) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1506 3mmo:A (1.55) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1507 3mmo:A (1.55) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1508 3mmo:A (1.55) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1509 3mmo:B (1.55) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1510 3mmo:B (1.55) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1511 3mmo:B (1.55) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1512 3mmo:B (1.55) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1513 3mmo:B (1.55) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1514 3mmo:B (1.55) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1515 3mmo:B (1.55) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1516 3mmo:B (1.55) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1517 3nbs:A (2.2) BS01 HEC ? GO:0005515 ... P00004 20615990
    1518 3nbs:A (2.2) BS02 HEC ? GO:0005515 ... P00004 20615990
    1519 3nbs:B (2.2) BS01 HEC ? GO:0005515 ... P00004 20615990
    1520 3nbs:B (2.2) BS02 HEC ? GO:0005515 ... P00004 20615990
    1521 3nbs:C (2.2) BS01 HEC ? GO:0005515 ... P00004 20615990
    1522 3nbs:D (2.2) BS01 HEC ? GO:0005515 ... P00004 20615990
    1523 3nbt:A (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1524 3nbt:B (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1525 3nbt:C (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1526 3nbt:D (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1527 3nbt:E (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1528 3nbt:E (2.1) BS02 HEC ? GO:0005515 ... P00004 20615990
    1529 3nbt:F (2.1) BS01 HEC ? GO:0005515 ... P00004 20615990
    1530 3nwv:A (1.9) BS01 HEC ? GO:0005515 ... P99999 21192676
    1531 3nwv:B (1.9) BS01 HEC ? GO:0005515 ... P99999 21192676
    1532 3nwv:C (1.9) BS01 HEC ? GO:0005515 ... P99999 21192676
    1533 3nwv:D (1.9) BS01 HEC ? GO:0005515 ... P99999 21192676
    1534 3o0r:C (2.7) BS03 HEC 1.7.99.7 GO:0005886 ... Q59646 21109633
    1535 3o1y:A (1.75) BS01 HEC ? GO:0005515 ... P00004 24662464
    1536 3o1y:B (1.75) BS01 HEC ? GO:0005515 ... P00004 24662464
    1537 3o1y:C (1.75) BS01 HEC ? GO:0005515 ... P00004 24662464
    1538 3o20:A (1.9) BS01 HEC ? GO:0005515 ... P00004 24662464
    1539 3o20:B (1.9) BS01 HEC ? GO:0005515 ... P00004 24662464
    1540 3o20:C (1.9) BS01 HEC ? GO:0005515 ... P00004 24662464
    1541 3o5a:B (1.72) BS01 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    1542 3o5a:B (1.72) BS02 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    1543 3oa8:A (1.77) BS01 HEC 2.8.5.2 GO:0009055 ... D7A6E5 N/A
    1544 3oa8:B (1.77) BS01 HEC ? GO:0009055 ... Q7BQR5 N/A
    1545 3oa8:C (1.77) BS01 HEC 2.8.5.2 GO:0009055 ... D7A6E5 N/A
    1546 3oa8:D (1.77) BS01 HEC ? GO:0009055 ... Q7BQR5 N/A
    1547 3oa8:E (1.77) BS01 HEC 2.8.5.2 GO:0009055 ... D7A6E5 N/A
    1548 3oa8:F (1.77) BS01 HEC ? GO:0009055 ... Q7BQR5 N/A
    1549 3ocd:A (2.25) BS01 HEC 2.8.5.2 GO:0009055 ... D7A6E5 N/A
    1550 3ocd:B (2.25) BS01 HEC ? GO:0009055 ... Q7BQR5 N/A
    1551 3ocd:C (2.25) BS01 HEC 2.8.5.2 GO:0009055 ... D7A6E5 N/A
    1552 3ocd:D (2.25) BS01 HEC ? GO:0009055 ... Q7BQR5 N/A
    1553 3orv:A (1.91) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20929212
    1554 3orv:A (1.91) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20929212
    1555 3orv:B (1.91) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 20929212
    1556 3orv:B (1.91) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 20929212
    1557 3oue:A (2.15) BS01 HEC ? N/A Q74BP5 21130881
    1558 3oue:A (2.15) BS02 HEC ? N/A Q74BP5 21130881
    1559 3oue:A (2.15) BS03 HEC ? N/A Q74BP5 21130881
    1560 3oue:A (2.15) BS04 HEC ? N/A Q74BP5 21130881
    1561 3oue:A (2.15) BS05 HEC ? N/A Q74BP5 21130881
    1562 3oue:A (2.15) BS06 HEC ? N/A Q74BP5 21130881
    1563 3ouq:A (2.6) BS01 HEC ? N/A Q74BP5 21130881
    1564 3ouq:A (2.6) BS02 HEC ? N/A Q74BP5 21130881
    1565 3ouq:A (2.6) BS03 HEC ? N/A Q74BP5 21130881
    1566 3ouq:A (2.6) BS04 HEC ? N/A Q74BP5 21130881
    1567 3ouq:A (2.6) BS05 HEC ? N/A Q74BP5 21130881
    1568 3ouq:A (2.6) BS06 HEC ? N/A Q74BP5 21130881
    1569 3ov0:A (3.2) BS01 HEC ? GO:0046872 ... Q74BP5 21130881
    1570 3ov0:A (3.2) BS02 HEC ? GO:0046872 ... Q74BP5 21130881
    1571 3ov0:A (3.2) BS03 HEC ? GO:0046872 ... Q74BP5 21130881
    1572 3ov0:A (3.2) BS04 HEC ? GO:0046872 ... Q74BP5 21130881
    1573 3ov0:A (3.2) BS05 HEC ? GO:0046872 ... Q74BP5 21130881
    1574 3ov0:A (3.2) BS06 HEC ? GO:0046872 ... Q74BP5 21130881
    1575 3ov0:A (3.2) BS07 HEC ? GO:0046872 ... Q74BP5 21130881
    1576 3ov0:A (3.2) BS08 HEC ? GO:0046872 ... Q74BP5 21130881
    1577 3ov0:A (3.2) BS09 HEC ? GO:0046872 ... Q74BP5 21130881
    1578 3ov0:A (3.2) BS10 HEC ? GO:0046872 ... Q74BP5 21130881
    1579 3ov0:A (3.2) BS11 HEC ? GO:0046872 ... Q74BP5 21130881
    1580 3ov0:A (3.2) BS12 HEC ? GO:0046872 ... Q74BP5 21130881
    1581 3owm:A (1.65) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1582 3owm:A (1.65) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1583 3owm:A (1.65) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1584 3owm:A (1.65) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1585 3owm:A (1.65) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1586 3owm:A (1.65) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1587 3owm:A (1.65) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1588 3owm:A (1.65) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1589 3owm:B (1.65) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1590 3owm:B (1.65) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1591 3owm:B (1.65) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1592 3owm:B (1.65) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1593 3owm:B (1.65) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1594 3owm:B (1.65) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1595 3owm:B (1.65) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1596 3owm:B (1.65) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1597 3ph2:B (1.4) BS01 HEC ? GO:0005506 ... F2Z292 21267610
    1598 3pmq:A (3.2) BS01 HEC ? N/A Q8EG32 21606337
    1599 3pmq:A (3.2) BS02 HEC ? N/A Q8EG32 21606337
    1600 3pmq:A (3.2) BS03 HEC ? N/A Q8EG32 21606337
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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