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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1ogy:M (3.2) BS04 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    602 1ogy:N (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    603 1ogy:N (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    604 1ogy:O (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    605 1ogy:P (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    606 1ogy:P (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    607 1os6:A (1.45) BS01 HEC ? GO:0009055 ... Q8GGK7 14744127
    608 1os6:A (1.45) BS02 HEC ? GO:0009055 ... Q8GGK7 14744127
    609 1os6:A (1.45) BS03 HEC ? GO:0009055 ... Q8GGK7 14744127
    610 1p84:C (2.5) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    611 1p84:C (2.5) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    612 1p84:D (2.5) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 12782631
    613 1pby:A (1.7) BS01 HEC 1.4.99.3 GO:0009055 ... Q8VUT0 12925784
    614 1pby:A (1.7) BS02 HEC 1.4.99.3 GO:0009055 ... Q8VUT0 12925784
    615 1pby:B (1.7) BS01 HEC ? N/A Q8VUS7 12925784
    616 1pp9:D (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    617 1pp9:Q (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    618 1ppj:D (2.1) BS02 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    619 1ppj:Q (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    620 1prc:C (2.3) BS01 HEC ? GO:0005506 ... P07173 7877166
    621 1prc:C (2.3) BS02 HEC ? GO:0005506 ... P07173 7877166
    622 1prc:C (2.3) BS03 HEC ? GO:0005506 ... P07173 7877166
    623 1prc:C (2.3) BS04 HEC ? GO:0005506 ... P07173 7877166
    624 1q90:A (3.1) BS01 HEC ? GO:0005506 ... P23577 14647374
    625 1q90:B (3.1) BS01 HEC ? GO:0009055 ... Q00471 14647374
    626 1q90:B (3.1) BS02 HEC ? GO:0009055 ... Q00471 14647374
    627 1q90:B (3.1) BS03 HEC ? GO:0009055 ... Q00471 14647374
    628 1q90:D (3.1) BS01 HEC ? GO:0005739 ... P23230 14647374
    629 1q9i:A (1.6) BS01 HEC 1.3.2.4 GO:0008202 ... Q07WU7 15109257
    630 1q9i:A (1.6) BS02 HEC 1.3.2.4 GO:0008202 ... Q07WU7 15109257
    631 1q9i:A (1.6) BS03 HEC 1.3.2.4 GO:0008202 ... Q07WU7 15109257
    632 1q9i:A (1.6) BS04 HEC 1.3.2.4 GO:0008202 ... Q07WU7 15109257
    633 1qdb:A (1.9) BS02 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    634 1qdb:A (1.9) BS03 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    635 1qdb:A (1.9) BS04 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    636 1qdb:A (1.9) BS05 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    637 1qdb:A (1.9) BS06 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    638 1qdb:B (1.9) BS02 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    639 1qdb:B (1.9) BS03 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    640 1qdb:B (1.9) BS04 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    641 1qdb:B (1.9) BS05 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    642 1qdb:B (1.9) BS06 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    643 1qdb:C (1.9) BS02 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    644 1qdb:C (1.9) BS03 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    645 1qdb:C (1.9) BS04 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    646 1qdb:C (1.9) BS05 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    647 1qdb:C (1.9) BS06 HEC 1.7.2.2 GO:0005509 ... Q9Z4P4 10440380
    648 1qjd:A (1.8) BS01 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    649 1qjd:A (1.8) BS02 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    650 1qjd:A (1.8) BS03 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    651 1qjd:A (1.8) BS04 HEC 1.3.2.4 GO:0008202 ... Q07WU7 10581550
    652 1qks:A (1.28) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 7736589
    653 1qks:B (1.28) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 7736589
    654 1ql3:A (1.4) BS01 HEC ? GO:0009055 ... P54820 10623555
    655 1ql3:B (1.4) BS01 HEC ? GO:0009055 ... P54820 10623555
    656 1ql3:C (1.4) BS01 HEC ? GO:0009055 ... P54820 10623555
    657 1ql3:D (1.4) BS01 HEC ? GO:0009055 ... P54820 10623555
    658 1ql4:A (1.5) BS01 HEC ? GO:0009055 ... P54820 10623555
    659 1ql4:B (1.5) BS01 HEC ? GO:0009055 ... P54820 10623555
    660 1ql4:C (1.5) BS01 HEC ? GO:0009055 ... P54820 10623555
    661 1ql4:D (1.5) BS01 HEC ? GO:0009055 ... P54820 10623555
    662 1qn0:A (-1.00) BS01 HEC ? GO:0009055 ... P00133 10756105
    663 1qn0:A (-1.00) BS02 HEC ? GO:0009055 ... P00133 10756105
    664 1qn0:A (-1.00) BS03 HEC ? GO:0009055 ... P00133 10756105
    665 1qn0:A (-1.00) BS04 HEC ? GO:0009055 ... P00133 10756105
    666 1qn1:A (-1.00) BS01 HEC ? GO:0009055 ... P00133 10756105
    667 1qn1:A (-1.00) BS02 HEC ? GO:0009055 ... P00133 10756105
    668 1qn1:A (-1.00) BS03 HEC ? GO:0009055 ... P00133 10756105
    669 1qn1:A (-1.00) BS04 HEC ? GO:0009055 ... P00133 10756105
    670 1qn2:A (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    671 1qn2:B (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    672 1qn2:C (2.01) BS01 HEC ? GO:0009055 ... Q7SIA4 10386873
    673 1raq:A (1.9) BS01 HEC ? GO:0005515 ... P00044 8401228
    674 1rwj:A (1.7) BS01 HEC ? N/A Q74BP5 15133162
    675 1rwj:A (1.7) BS02 HEC ? N/A Q74BP5 15133162
    676 1rwj:A (1.7) BS03 HEC ? N/A Q74BP5 15133162
    677 1rz5:A (2.4) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    678 1rz5:A (2.4) BS03 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    679 1rz6:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    680 1rz6:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    681 1s05:A (-1.00) BS01 HEC ? GO:0005506 ... P00150 14735333
    682 1s56:A (2.43) BS01 HEC ? GO:0005344 ... P9WN25 15016811
    683 1s5l:E (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    684 1s5l:F (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    685 1s5l:V (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    686 1s5l:e (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    687 1s5l:f (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    688 1s5l:v (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    689 1s6v:A (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    690 1s6v:B (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    691 1s6v:C (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    692 1s6v:D (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    693 1sp3:A (2.2) BS01 HEC ? GO:0016491 ... Q8E9W8 15361860
    694 1sp3:A (2.2) BS02 HEC ? GO:0016491 ... Q8E9W8 15361860
    695 1sp3:A (2.2) BS03 HEC ? GO:0016491 ... Q8E9W8 15361860
    696 1sp3:A (2.2) BS04 HEC ? GO:0016491 ... Q8E9W8 15361860
    697 1sp3:A (2.2) BS05 HEC ? GO:0016491 ... Q8E9W8 15361860
    698 1sp3:A (2.2) BS06 HEC ? GO:0016491 ... Q8E9W8 15361860
    699 1sp3:A (2.2) BS07 HEC ? GO:0016491 ... Q8E9W8 15361860
    700 1sp3:A (2.2) BS08 HEC ? GO:0016491 ... Q8E9W8 15361860
    701 1sqp:C (2.7) BS01 HEC ? GO:0005739 ... P00157 15312779
    702 1sqp:C (2.7) BS02 HEC ? GO:0005739 ... P00157 15312779
    703 1sqp:D (2.7) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    704 1sqq:C (3.0) BS01 HEC ? GO:0005739 ... P00157 15312779
    705 1sqq:C (3.0) BS02 HEC ? GO:0005739 ... P00157 15312779
    706 1sqq:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    707 1sqv:C (2.85) BS01 HEC 1.10.2.2 GO:0005739 ... P00157 15312779
    708 1sqv:C (2.85) BS02 HEC 1.10.2.2 GO:0005739 ... P00157 15312779
    709 1sqv:D (2.85) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    710 1sqx:C (2.6) BS02 HEC ? GO:0005739 ... P00157 15312779
    711 1sqx:C (2.6) BS03 HEC ? GO:0005739 ... P00157 15312779
    712 1sqx:D (2.6) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 15312779
    713 1tkw:A (-1.00) BS02 HEC ? GO:0005507 ... P00299 15863096
    714 1tkw:B (-1.00) BS01 HEC ? GO:0005506 ... P36438 15863096
    715 1tu2:B (-1.00) BS01 HEC ? GO:0005506 ... Q93SW9 15705583
    716 1u75:B (2.55) BS01 HEC ? GO:0005515 ... P00004 15339156
    717 1up9:A (1.35) BS01 HEC ? GO:0009055 ... Q9L915 14705030
    718 1up9:A (1.35) BS02 HEC ? GO:0009055 ... Q9L915 14705030
    719 1up9:A (1.35) BS03 HEC ? GO:0009055 ... Q9L915 14705030
    720 1up9:A (1.35) BS04 HEC ? GO:0009055 ... Q9L915 14705030
    721 1upd:A (1.4) BS01 HEC ? GO:0009055 ... Q9L915 14705030
    722 1upd:A (1.4) BS02 HEC ? GO:0009055 ... Q9L915 14705030
    723 1upd:A (1.4) BS03 HEC ? GO:0009055 ... Q9L915 14705030
    724 1upd:A (1.4) BS04 HEC ? GO:0009055 ... Q9L915 14705030
    725 1vrn:C (2.2) BS01 HEC ? GO:0005506 ... P07173 15858271
    726 1vrn:C (2.2) BS02 HEC ? GO:0005506 ... P07173 15858271
    727 1vrn:C (2.2) BS03 HEC ? GO:0005506 ... P07173 15858271
    728 1vrn:C (2.2) BS04 HEC ? GO:0005506 ... P07173 15858271
    729 1w2l:A (1.3) BS01 HEC 7.1.1.9 GO:0009055 ... Q9F3S9 15644203
    730 1w5c:T (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A
    731 1w5c:V (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A
    732 1w7o:A (1.81) BS01 HEC ? GO:0009055 ... Q6XCI5 15456779
    733 1w7o:A (1.81) BS02 HEC ? GO:0009055 ... Q6XCI5 15456779
    734 1w7o:A (1.81) BS03 HEC ? GO:0009055 ... Q6XCI5 15456779
    735 1w7o:A (1.81) BS04 HEC ? GO:0009055 ... Q6XCI5 15456779
    736 1wr5:A (1.4) BS01 HEC ? GO:0009055 ... P00132 14581238
    737 1wr5:A (1.4) BS02 HEC ? GO:0009055 ... P00132 14581238
    738 1wr5:A (1.4) BS03 HEC ? GO:0009055 ... P00132 14581238
    739 1wr5:A (1.4) BS04 HEC ? GO:0009055 ... P00132 14581238
    740 1ycc:A (1.23) BS01 HEC ? GO:0005515 ... P00044 2166169
    741 1yea:A (1.9) BS01 HEC ? GO:0005739 ... P00045 1326054
    742 1yeb:A (1.95) BS01 HEC ? GO:0005739 ... P00045 1326054
    743 1yfc:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 8901521
    744 1yic:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 9220987
    745 1yiq:A (2.2) BS03 HEC 1.1.9.1 GO:0005509 ... Q4W6G0 16061256
    746 1ynr:A (2.0) BS01 HEC ? GO:0005506 ... P15452 15883159
    747 1ynr:B (2.0) BS01 HEC ? GO:0005506 ... P15452 15883159
    748 1ynr:C (2.0) BS01 HEC ? GO:0005506 ... P15452 15883159
    749 1ynr:D (2.0) BS01 HEC ? GO:0005506 ... P15452 15883159
    750 1ytc:A (1.8) BS01 HEC ? GO:0005739 ... P00045 8639684
    751 1z1n:X (2.1) BS01 HEC ? GO:0009055 ... T2G9Q2 N/A
    752 1z1n:X (2.1) BS02 HEC ? GO:0009055 ... T2G9Q2 N/A
    753 1z1n:X (2.1) BS03 HEC ? GO:0009055 ... T2G9Q2 N/A
    754 1z1n:X (2.1) BS04 HEC ? GO:0009055 ... T2G9Q2 N/A
    755 1z1n:X (2.1) BS05 HEC ? GO:0009055 ... T2G9Q2 N/A
    756 1z1n:X (2.1) BS06 HEC ? GO:0009055 ... T2G9Q2 N/A
    757 1z1n:X (2.1) BS07 HEC ? GO:0009055 ... T2G9Q2 N/A
    758 1z1n:X (2.1) BS08 HEC ? GO:0009055 ... T2G9Q2 N/A
    759 1z1n:X (2.1) BS09 HEC ? GO:0009055 ... T2G9Q2 N/A
    760 1z1n:X (2.1) BS10 HEC ? GO:0009055 ... T2G9Q2 N/A
    761 1z1n:X (2.1) BS11 HEC ? GO:0009055 ... T2G9Q2 N/A
    762 1z1n:X (2.1) BS12 HEC ? GO:0009055 ... T2G9Q2 N/A
    763 1z1n:X (2.1) BS13 HEC ? GO:0009055 ... T2G9Q2 N/A
    764 1z1n:X (2.1) BS14 HEC ? GO:0009055 ... T2G9Q2 N/A
    765 1z1n:X (2.1) BS15 HEC ? GO:0009055 ... T2G9Q2 N/A
    766 1z1n:X (2.1) BS16 HEC ? GO:0009055 ... T2G9Q2 N/A
    767 1zrt:D (3.51) BS01 HEC ? GO:0005886 ... P0CY49 16034531
    768 1zrt:Q (3.51) BS01 HEC ? GO:0005886 ... P0CY49 16034531
    769 1zzh:A (2.7) BS03 HEC N/A GO:0009055 ... N/A 16314410
    770 1zzh:A (2.7) BS04 HEC N/A GO:0009055 ... N/A 16314410
    771 1zzh:B (2.7) BS04 HEC N/A GO:0009055 ... N/A 16314410
    772 1zzh:B (2.7) BS05 HEC N/A GO:0009055 ... N/A 16314410
    773 1zzh:C (2.7) BS02 HEC N/A GO:0009055 ... N/A 16314410
    774 1zzh:C (2.7) BS03 HEC N/A GO:0009055 ... N/A 16314410
    775 1zzh:D (2.7) BS02 HEC N/A GO:0009055 ... N/A 16314410
    776 1zzh:D (2.7) BS03 HEC N/A GO:0009055 ... N/A 16314410
    777 2a06:D (2.1) BS02 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    778 2a06:Q (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    779 2a3m:A (1.5) BS01 HEC ? GO:0009055 ... Q30WH0 16580681
    780 2a3m:A (1.5) BS02 HEC ? GO:0009055 ... Q30WH0 16580681
    781 2a3m:A (1.5) BS03 HEC ? GO:0009055 ... Q30WH0 16580681
    782 2a3m:A (1.5) BS04 HEC ? GO:0009055 ... Q30WH0 16580681
    783 2a3p:A (2.3) BS01 HEC ? GO:0009055 ... Q30WH0 16580681
    784 2a3p:A (2.3) BS02 HEC ? GO:0009055 ... Q30WH0 16580681
    785 2a3p:A (2.3) BS03 HEC ? GO:0009055 ... Q30WH0 16580681
    786 2a3p:A (2.3) BS04 HEC ? GO:0009055 ... Q30WH0 16580681
    787 2ai5:A (-1.00) BS01 HEC ? GO:0005506 ... P15452 16681384
    788 2b0z:B (2.7) BS01 HEC ? GO:0005515 ... P00044 16227441
    789 2b11:C (2.3) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 16227441
    790 2b11:D (2.3) BS01 HEC ? GO:0005515 ... P00044 16227441
    791 2b12:B (3.02) BS01 HEC ? GO:0005515 ... P00044 16227441
    792 2bc5:A (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    793 2bc5:B (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    794 2bc5:C (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    795 2bc5:D (2.25) BS01 HEC ? GO:0005506 ... P0ABE7 16939202
    796 2bcn:B (1.7) BS01 HEC ? GO:0005515 ... P00044 16478190
    797 2bgv:X (1.9) BS01 HEC ? GO:0009055 ... Q00499 15885094
    798 2bh4:X (1.55) BS01 HEC ? GO:0009055 ... Q00499 15885094
    799 2bh5:X (1.95) BS01 HEC ? GO:0009055 ... Q00499 15885094
    800 2blf:A (1.8) BS02 HEC ? GO:0006790 ... Q9LA16 15863498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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