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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1iqc:D (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    402 1iqc:D (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    403 1it1:A (-1.00) BS01 HEC ? GO:0009055 ... P00132 12054869
    404 1it1:A (-1.00) BS02 HEC ? GO:0009055 ... P00132 12054869
    405 1it1:A (-1.00) BS03 HEC ? GO:0009055 ... P00132 12054869
    406 1it1:A (-1.00) BS04 HEC ? GO:0009055 ... P00132 12054869
    407 1j3s:A (-1.00) BS01 HEC ? GO:0005515 ... P99999 N/A
    408 1jmx:A (1.9) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    409 1jmx:A (1.9) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    410 1jmx:B (1.9) BS01 HEC ? N/A Q8VW82 11704672
    411 1jmz:A (2.0) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    412 1jmz:A (2.0) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    413 1jmz:B (2.0) BS01 HEC ? N/A Q8VW82 11704672
    414 1jni:A (1.25) BS01 HEC ? GO:0009061 ... P44654 11939777
    415 1jni:A (1.25) BS02 HEC ? GO:0009061 ... P44654 11939777
    416 1k3g:A (-1.00) BS01 HEC ? GO:0005506 ... P82599 11933230
    417 1k3h:A (-1.00) BS01 HEC ? GO:0005506 ... P82599 11933230
    418 1kb0:A (1.44) BS02 HEC 1.1.9.1 GO:0005509 ... Q46444 11714714
    419 1kib:A (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    420 1kib:B (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    421 1kib:C (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    422 1kib:D (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    423 1kib:E (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    424 1kib:F (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    425 1kib:G (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    426 1kib:H (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    427 1kv9:A (1.9) BS03 HEC 1.1.9.1 GO:0005509 ... Q8GR64 12057198
    428 1kwj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 11883773
    429 1kwj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 11883773
    430 1kwj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 11883773
    431 1kx2:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    432 1kx7:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    433 1kyo:C (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    434 1kyo:C (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    435 1kyo:D (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    436 1kyo:N (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    437 1kyo:N (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    438 1kyo:O (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    439 1kyo:W (2.97) BS01 HEC ? GO:0005515 ... P00044 11880631
    440 1l3o:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 11883773
    441 1l3o:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 11883773
    442 1l3o:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 11883773
    443 1lc1:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    444 1lc2:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    445 1lm2:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 12119407
    446 1lm2:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 12119407
    447 1lm2:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 12119407
    448 1lms:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 12617658
    449 1m1p:A (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    450 1m1p:A (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    451 1m1p:A (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    452 1m1p:A (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    453 1m1p:B (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    454 1m1p:B (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    455 1m1p:B (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    456 1m1p:B (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    457 1m1p:C (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    458 1m1p:C (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    459 1m1p:C (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    460 1m1p:C (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    461 1m1p:D (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    462 1m1p:D (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    463 1m1p:D (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    464 1m1p:D (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    465 1m1p:E (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    466 1m1p:E (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    467 1m1p:E (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    468 1m1p:E (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    469 1m1p:E (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    470 1m1p:F (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    471 1m1p:F (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    472 1m1p:F (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    473 1m1p:F (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    474 1m1p:F (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    475 1m1q:A (0.97) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    476 1m1q:A (0.97) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    477 1m1q:A (0.97) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    478 1m1q:A (0.97) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    479 1m1r:A (1.02) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    480 1m1r:A (1.02) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    481 1m1r:A (1.02) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    482 1m1r:A (1.02) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    483 1m6z:A (1.35) BS01 HEC ? GO:0005506 ... Q52369 N/A
    484 1m6z:A (1.35) BS02 HEC ? GO:0005506 ... Q52369 N/A
    485 1m6z:B (1.35) BS01 HEC ? GO:0005506 ... Q52369 N/A
    486 1m6z:B (1.35) BS02 HEC ? GO:0005506 ... Q52369 N/A
    487 1m6z:C (1.35) BS01 HEC ? GO:0005506 ... Q52369 N/A
    488 1m6z:C (1.35) BS02 HEC ? GO:0005506 ... Q52369 N/A
    489 1m6z:D (1.35) BS01 HEC ? GO:0005506 ... Q52369 N/A
    490 1m6z:D (1.35) BS02 HEC ? GO:0005506 ... Q52369 N/A
    491 1m70:A (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    492 1m70:A (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    493 1m70:B (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    494 1m70:B (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    495 1m70:C (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    496 1m70:C (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    497 1m70:D (1.25) BS01 HEC ? GO:0005506 ... Q52369 N/A
    498 1m70:D (1.25) BS02 HEC ? GO:0005506 ... Q52369 N/A
    499 1mg2:D (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    500 1mg2:H (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    501 1mg2:L (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    502 1mg2:P (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    503 1mg3:D (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    504 1mg3:H (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    505 1mg3:L (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    506 1mg3:P (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    507 1mqv:A (1.78) BS01 HEC ? GO:0005506 ... P00149 12407175
    508 1mqv:B (1.78) BS01 HEC ? GO:0005506 ... P00149 12407175
    509 1mz4:A (1.8) BS02 HEC ? GO:0005506 ... P0A386 12881497
    510 1n15:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    511 1n15:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    512 1n50:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    513 1n50:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    514 1n90:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    515 1n90:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    516 1n9c:A (-1.00) BS01 HEC ? GO:0005506 ... P82599 12534286
    517 1new:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 9760163
    518 1new:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 9760163
    519 1new:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 9760163
    520 1nir:A (2.15) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9331415
    521 1nir:B (2.15) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9331415
    522 1nmi:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 N/A
    523 1nml:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    524 1nml:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    525 1nno:A (2.65) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    526 1nno:B (2.65) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    527 1oae:A (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    528 1oae:B (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    529 1oah:A (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    530 1oah:A (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    531 1oah:A (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    532 1oah:A (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    533 1oah:A (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    534 1oah:A (2.3) BS09 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    535 1oah:B (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    536 1oah:B (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    537 1oah:B (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    538 1oah:B (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    539 1oah:B (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    540 1oah:B (2.3) BS06 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    541 1ocd:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 8823161
    542 1ofw:A (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    543 1ofw:A (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    544 1ofw:A (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    545 1ofw:A (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    546 1ofw:A (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    547 1ofw:A (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    548 1ofw:A (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    549 1ofw:A (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    550 1ofw:A (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    551 1ofw:B (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    552 1ofw:B (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    553 1ofw:B (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    554 1ofw:B (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    555 1ofw:B (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    556 1ofw:B (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    557 1ofw:B (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    558 1ofw:B (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    559 1ofw:B (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    560 1ofw:B (1.5) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    561 1ofy:A (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    562 1ofy:A (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    563 1ofy:A (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    564 1ofy:A (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    565 1ofy:A (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    566 1ofy:A (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    567 1ofy:A (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    568 1ofy:A (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    569 1ofy:A (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    570 1ofy:B (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    571 1ofy:B (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    572 1ofy:B (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    573 1ofy:B (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    574 1ofy:B (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    575 1ofy:B (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    576 1ofy:B (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    577 1ofy:B (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    578 1ofy:B (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    579 1ofy:B (2.0) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    580 1og2:A (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    581 1og2:B (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    582 1og5:A (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    583 1og5:B (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 12861225
    584 1ogy:A (3.2) BS04 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    585 1ogy:B (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    586 1ogy:B (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    587 1ogy:C (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    588 1ogy:D (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    589 1ogy:D (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    590 1ogy:D (3.2) BS03 HEC ? GO:0009061 ... Q53177 14528294
    591 1ogy:F (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    592 1ogy:F (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    593 1ogy:H (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    594 1ogy:H (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    595 1ogy:I (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    596 1ogy:J (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    597 1ogy:J (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    598 1ogy:K (3.2) BS05 HEC 1.9.6.1 GO:0005506 ... Q53176 14528294
    599 1ogy:L (3.2) BS01 HEC ? GO:0009061 ... Q53177 14528294
    600 1ogy:L (3.2) BS02 HEC ? GO:0009061 ... Q53177 14528294
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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