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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 8ac3:O (2.8) BS01 HEC 7.1.1.8 GO:0005743 ... Q6CGP7 36598500
    4402 8ac4:D (2.7) BS01 HEC 7.1.1.8 GO:0005743 ... Q6CGP7 36598500
    4403 8ac4:O (2.7) BS01 HEC 7.1.1.8 GO:0005743 ... Q6CGP7 36598500
    4404 8ac5:C (3.1) BS01 HEC ? GO:0005739 ... Q9B6D0 36598500
    4405 8ac5:C (3.1) BS02 HEC ? GO:0005739 ... Q9B6D0 36598500
    4406 8ac5:D (3.1) BS01 HEC 7.1.1.8 GO:0005743 ... Q6CGP7 36598500
    4407 8ac5:N (3.1) BS01 HEC ? GO:0005739 ... Q9B6D0 36598500
    4408 8ac5:N (3.1) BS02 HEC ? GO:0005739 ... Q9B6D0 36598500
    4409 8ac5:O (3.1) BS01 HEC 7.1.1.8 GO:0005743 ... Q6CGP7 36598500
    4410 8asi:C (2.9) BS02 HEC ? GO:0009055 ... Q3IY11 36913593
    4411 8asi:G (2.9) BS02 HEC ? GO:0009055 ... Q3IY11 36913593
    4412 8asj:C (3.75) BS02 HEC ? GO:0009055 ... Q3IY11 36913593
    4413 8asj:G (3.75) BS02 HEC ? GO:0009055 ... Q3IY11 36913593
    4414 8b6g:CE (3.0) BS01 HEC ? N/A Q24I09 36949187
    4415 8b6j:D (2.8) BS01 HEC ? GO:0005739 ... Q24IM5 36949187
    4416 8b6j:d (2.8) BS01 HEC ? GO:0005739 ... Q24IM5 36949187
    4417 8bcx:A (1.941) BS01 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4418 8bcx:A (1.941) BS02 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4419 8bcx:A (1.941) BS03 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4420 8bcx:A (1.941) BS04 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4421 8bcx:A (1.941) BS05 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4422 8bcx:B (1.941) BS01 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4423 8bcx:B (1.941) BS02 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4424 8bcx:B (1.941) BS03 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4425 8bcx:B (1.941) BS04 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4426 8bcx:B (1.941) BS05 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4427 8bcx:C (1.941) BS01 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4428 8bcx:C (1.941) BS02 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4429 8bcx:C (1.941) BS03 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4430 8bcx:C (1.941) BS04 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4431 8bcx:C (1.941) BS05 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4432 8bcx:D (1.941) BS01 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4433 8bcx:D (1.941) BS02 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4434 8bcx:D (1.941) BS03 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4435 8bcx:D (1.941) BS04 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4436 8bcx:D (1.941) BS05 HEC 1.7.2.2 GO:0042279 ... Q39YY5 37460131
    4437 8bqs:CE (2.9) BS01 HEC ? N/A Q24I09 N/A
    4438 8bqs:D (2.9) BS01 HEC ? GO:0005739 ... Q24IM5 N/A
    4439 8bqs:d (2.9) BS01 HEC ? GO:0005739 ... Q24IM5 N/A
    4440 8brk:A (1.75) BS01 HEC ? N/A Q746G4 37199504
    4441 8brl:D (1.88) BS01 HEC ? GO:0005506 ... F7J213 37199504
    4442 8d9m:A (4.2) BS01 HEC ? N/A Q74BG5 36062910
    4443 8d9m:A (4.2) BS02 HEC ? N/A Q74BG5 36062910
    4444 8d9m:A (4.2) BS03 HEC ? N/A Q74BG5 36062910
    4445 8d9m:A (4.2) BS04 HEC ? N/A Q74BG5 36062910
    4446 8d9m:A (4.2) BS05 HEC ? N/A Q74BG5 36062910
    4447 8d9m:A (4.2) BS06 HEC ? N/A Q74BG5 36062910
    4448 8d9m:A (4.2) BS07 HEC ? N/A Q74BG5 36062910
    4449 8d9m:A (4.2) BS08 HEC ? N/A Q74BG5 36062910
    4450 8drd:A (1.89) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4451 8drd:B (1.89) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4452 8drf:A (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4453 8drj:A (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4454 8drj:C (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4455 8drl:A (1.65) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4456 8drm:A (1.55) BS01 HEC ? GO:0005506 ... P0ABE7 36154053
    4457 8dvx:A (1.5) BS01 HEC ? GO:0005739 ... P62895 37443314
    4458 8dvx:B (1.5) BS01 HEC ? GO:0005739 ... P62895 37443314
    4459 8dvx:C (1.5) BS02 HEC ? GO:0005739 ... P62895 37443314
    4460 8dvx:D (1.5) BS02 HEC ? GO:0005739 ... P62895 37443314
    4461 8dzl:A (1.36) BS01 HEC ? GO:0002931 ... P62898 37443314
    4462 8dzl:B (1.36) BS01 HEC ? GO:0002931 ... P62898 37443314
    4463 8dzl:C (1.36) BS01 HEC ? GO:0002931 ... P62898 37443314
    4464 8dzl:D (1.36) BS01 HEC ? GO:0002931 ... P62898 37443314
    4465 8e5f:A (3.8) BS01 HEC ? GO:0016020 ... A3MW92 37290436
    4466 8e5f:A (3.8) BS02 HEC ? GO:0016020 ... A3MW92 37290436
    4467 8e5f:A (3.8) BS03 HEC ? GO:0016020 ... A3MW92 37290436
    4468 8e5f:A (3.8) BS04 HEC ? GO:0016020 ... A3MW92 37290436
    4469 8e5g:A (3.9) BS01 HEC ? N/A F2KMU8 37290436
    4470 8e5g:A (3.9) BS02 HEC ? N/A F2KMU8 37290436
    4471 8e5g:A (3.9) BS03 HEC ? N/A F2KMU8 37290436
    4472 8e5g:A (3.9) BS04 HEC ? N/A F2KMU8 37290436
    4473 8e73:D (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 36581760
    4474 8e73:P (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 36581760
    4475 8ed4:K (2.25) BS01 HEC ? GO:0009055 ... Q2TV05 36995233
    4476 8ez5:V (2.09) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4477 8ez5:v (2.09) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4478 8f4c:V (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4479 8f4c:v (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4480 8f4d:V (2.15) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4481 8f4d:v (2.15) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4482 8f4e:V (2.09) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4483 8f4e:v (2.09) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4484 8f4f:V (2.03) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4485 8f4f:v (2.03) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4486 8f4g:V (2.03) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4487 8f4g:v (2.03) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4488 8f4h:V (2.1) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4489 8f4h:v (2.1) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4490 8f4i:V (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4491 8f4i:v (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4492 8f4j:V (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4493 8f4j:v (2.0) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4494 8f4k:V (2.16) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4495 8f4k:v (2.16) BS01 HEC ? GO:0005506 ... P0A386 37138085
    4496 8gar:A (1.55) BS01 HEC ? N/A Q50927 37338957
    4497 8gn0:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4498 8gn0:v (2.15) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4499 8gn1:V (2.1) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4500 8gn1:v (2.1) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4501 8gn2:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4502 8gn2:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 37209822
    4503 8gth:A (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4504 8gth:B (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4505 8gth:C (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4506 8gth:D (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4507 8gth:E (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4508 8gth:F (3.1) BS01 HEC ? GO:0009055 ... A7NME2 37710959
    4509 8gy2:A (2.5) BS01 HEC 1.1.5.5 GO:0005509 ... O05542 N/A
    4510 8gy2:B (2.5) BS01 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    4511 8gy2:B (2.5) BS02 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    4512 8gy2:B (2.5) BS03 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    4513 8gy2:B (2.5) BS04 HEC 1.1.5.5 GO:0005506 ... Q47945 N/A
    4514 8gy3:A (2.7) BS01 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    4515 8gy3:A (2.7) BS02 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    4516 8gy3:A (2.7) BS03 HEC 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    4517 8gym:2E (2.96) BS01 HEC ? N/A Q24I09 37248254
    4518 8gym:2e (2.96) BS01 HEC ? N/A Q24I09 37248254
    4519 8gym:QD (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4520 8gym:Qd (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4521 8gym:qD (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4522 8gym:qd (2.96) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4523 8gzu:QD (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4524 8gzu:Qd (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4525 8gzu:qD (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4526 8gzu:qd (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    4527 8h28:A (2.06) BS01 HEC ? GO:0005506 ... A0A2Z6I6U9 37758155
    4528 8h28:B (2.06) BS01 HEC ? GO:0005506 ... A0A2Z6I6U9 37758155
    4529 8hcr:C (-1.00) BS01 HEC 7.1.1.8 GO:0005506 ... P9WP35 37158740
    4530 8hcr:C (-1.00) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 37158740
    4531 8hcr:O (-1.00) BS01 HEC 7.1.1.8 GO:0005506 ... P9WP35 37158740
    4532 8hcr:O (-1.00) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 37158740
    4533 8hn3:A (1.65) BS01 HEC ? GO:0005506 ... Q8KG95 37180033
    4534 8hn3:B (1.65) BS01 HEC ? GO:0005506 ... Q8KG95 37180033
    4535 8iao:AD (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    4536 8iao:Ad (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    4537 8iar:AD (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    4538 8iar:Ad (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    4539 8ib4:AD (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4540 8ib4:Ad (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4541 8ib7:AD (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    4542 8ib7:Ad (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    4543 8ib9:AD (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4544 8ib9:Ad (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4545 8ibc:AD (3.6) BS01 HEC N/A N/A Q9D0M3 N/A
    4546 8ibc:Ad (3.6) BS01 HEC N/A N/A Q9D0M3 N/A
    4547 8ibd:AD (4.2) BS02 HEC N/A N/A Q9D0M3 N/A
    4548 8ibd:Ad (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    4549 8ibg:AD (3.8) BS02 HEC N/A N/A Q9D0M3 N/A
    4550 8ibg:Ad (3.8) BS01 HEC N/A N/A Q9D0M3 N/A
    4551 8ic2:AD (6.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4552 8ic2:Ad (6.3) BS01 HEC N/A N/A Q9D0M3 N/A
    4553 8ic5:AD (4.1) BS01 HEC N/A N/A Q9D0M3 N/A
    4554 8ic5:Ad (4.1) BS01 HEC N/A N/A Q9D0M3 N/A
    4555 8iog:B (2.88) BS01 HEC ? GO:0005739 ... A0A287AZF9 N/A
    4556 8iog:b (2.88) BS01 HEC ? GO:0005739 ... A0A287AZF9 N/A
    4557 8ir5:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4558 8ir5:v (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4559 8ir6:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4560 8ir6:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4561 8ir7:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4562 8ir7:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4563 8ir8:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4564 8ir8:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4565 8ir9:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4566 8ir9:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4567 8ira:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4568 8ira:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4569 8irb:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4570 8irb:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4571 8irc:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4572 8irc:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4573 8ird:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4574 8ird:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4575 8ire:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4576 8ire:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4577 8irf:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4578 8irf:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4579 8irg:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4580 8irg:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4581 8irh:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4582 8irh:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4583 8iri:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4584 8iri:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    4585 8iuf:QD (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    4586 8iuf:Qd (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    4587 8iug:C (2.86) BS02 HEC ? GO:0005506 ... Q83XC9 37468106
    4588 8iug:C (2.86) BS03 HEC ? GO:0005506 ... Q83XC9 37468106
    4589 8iug:C (2.86) BS04 HEC ? GO:0005506 ... Q83XC9 37468106
    4590 8iug:C (2.86) BS05 HEC ? GO:0005506 ... Q83XC9 37468106
    4591 8iuj:QD (3.06) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    4592 8iuj:Qd (3.06) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    4593 8iun:C (2.85) BS01 HEC ? GO:0005506 ... A7NQE7 37468106
    4594 8iun:C (2.85) BS02 HEC ? GO:0005506 ... A7NQE7 37468106
    4595 8iun:C (2.85) BS03 HEC ? GO:0005506 ... A7NQE7 37468106
    4596 8iun:C (2.85) BS04 HEC ? GO:0005506 ... A7NQE7 37468106
    4597 8jej:C (2.5) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    4598 8jej:C (2.5) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    4599 8jej:C (2.5) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    4600 8jek:C (2.7) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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