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BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 7cou:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 33953929
    4002 7d1t:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 33753866
    4003 7d1t:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 33753866
    4004 7d1u:V (2.08) BS01 HEC ? GO:0005506 ... P0A387 33753866
    4005 7d1u:v (2.08) BS01 HEC ? GO:0005506 ... P0A387 33753866
    4006 7dcl:A (2.45) BS01 HEC N/A GO:0005506 ... N/A 34168770
    4007 7dcl:B (2.45) BS01 HEC N/A GO:0005506 ... N/A 34168770
    4008 7dgq:o (5.0) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4009 7dgq:z (5.0) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4010 7dgr:o (4.6) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 34913730
    4011 7dgr:z (4.6) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 34913730
    4012 7dgs:o (7.8) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4013 7dgs:z (7.8) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4014 7dkf:D1 (8.3) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4015 7dkf:P1 (8.3) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    4016 7e1v:C (2.68) BS01 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4017 7e1v:C (2.68) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4018 7e1v:O (2.68) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4019 7e1v:O (2.68) BS03 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4020 7e1w:C (2.67) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4021 7e1w:C (2.67) BS03 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4022 7e1w:O (2.67) BS03 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4023 7e1w:O (2.67) BS04 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4024 7e1x:C (2.93) BS02 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4025 7e1x:C (2.93) BS03 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4026 7e1x:O (2.93) BS03 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4027 7e1x:O (2.93) BS04 HEC 7.1.1.8 GO:0005506 ... P9WP35 34819223
    4028 7ead:A (1.74) BS01 HEC ? N/A Q746G4 35647678
    4029 7eda:V (2.78) BS01 HEC ? GO:0005506 ... P0A387 34216574
    4030 7jrg:D (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 33463523
    4031 7jrg:P (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 33463523
    4032 7jrp:D (3.8) BS01 HEC ? GO:0005743 ... A0A1S3W199 33463523
    4033 7jrp:P (3.8) BS01 HEC ? GO:0005743 ... A0A1S3W199 33463523
    4034 7ljx:A (1.31) BS01 HEC ? GO:0002931 ... P62898 33916826
    4035 7ljx:B (1.31) BS01 HEC ? GO:0002931 ... P62898 33916826
    4036 7lq5:A (3.4) BS01 HEC ? N/A Q74BG5 36732469
    4037 7lq5:A (3.4) BS02 HEC ? N/A Q74BG5 36732469
    4038 7lq5:A (3.4) BS03 HEC ? N/A Q74BG5 36732469
    4039 7lq5:A (3.4) BS04 HEC ? N/A Q74BG5 36732469
    4040 7lq5:A (3.4) BS05 HEC ? N/A Q74BG5 36732469
    4041 7lq5:A (3.4) BS06 HEC ? N/A Q74BG5 36732469
    4042 7lq5:A (3.4) BS07 HEC ? N/A Q74BG5 36732469
    4043 7lq5:A (3.4) BS08 HEC ? N/A Q74BG5 36732469
    4044 7lq5:A (3.4) BS09 HEC ? N/A Q74BG5 36732469
    4045 7lq5:B (3.4) BS01 HEC ? N/A Q74BG5 36732469
    4046 7lq5:B (3.4) BS02 HEC ? N/A Q74BG5 36732469
    4047 7lq5:B (3.4) BS03 HEC ? N/A Q74BG5 36732469
    4048 7lq5:B (3.4) BS04 HEC ? N/A Q74BG5 36732469
    4049 7lq5:B (3.4) BS05 HEC ? N/A Q74BG5 36732469
    4050 7lq5:B (3.4) BS06 HEC ? N/A Q74BG5 36732469
    4051 7lq5:B (3.4) BS07 HEC ? N/A Q74BG5 36732469
    4052 7lq5:B (3.4) BS08 HEC ? N/A Q74BG5 36732469
    4053 7lq5:B (3.4) BS09 HEC ? N/A Q74BG5 36732469
    4054 7lq5:B (3.4) BS10 HEC ? N/A Q74BG5 36732469
    4055 7lq5:C (3.4) BS01 HEC ? N/A Q74BG5 36732469
    4056 7lq5:C (3.4) BS02 HEC ? N/A Q74BG5 36732469
    4057 7lq5:C (3.4) BS03 HEC ? N/A Q74BG5 36732469
    4058 7lq5:C (3.4) BS04 HEC ? N/A Q74BG5 36732469
    4059 7lq5:C (3.4) BS05 HEC ? N/A Q74BG5 36732469
    4060 7lq5:C (3.4) BS06 HEC ? N/A Q74BG5 36732469
    4061 7lq5:C (3.4) BS07 HEC ? N/A Q74BG5 36732469
    4062 7lq5:C (3.4) BS08 HEC ? N/A Q74BG5 36732469
    4063 7lq5:C (3.4) BS09 HEC ? N/A Q74BG5 36732469
    4064 7lr5:A (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4065 7lr5:C (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4066 7lra:A (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4067 7lra:C (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4068 7lrb:A (1.78) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4069 7lrb:B (1.78) BS02 HEC ? GO:0005506 ... P0ABE7 35236987
    4070 7lrr:A (1.89) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4071 7lrr:B (1.89) BS02 HEC ? GO:0005506 ... P0ABE7 35236987
    4072 7lrv:A (1.4) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4073 7lrv:C (1.4) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4074 7lsj:A (1.26) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4075 7lsj:C (1.26) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4076 7lsl:A (1.64) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4077 7lsl:C (1.64) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4078 7lsn:A (1.52) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4079 7lsn:C (1.52) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4080 7lv1:A (1.91) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4081 7lv1:C (1.91) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4082 7lv4:A (1.99) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4083 7lv4:C (1.99) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    4084 7mk4:A (1.27) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4085 7mk4:B (1.27) BS02 HEC ? GO:0005506 ... P0ABE7 35236987
    4086 7mri:A (2.46) BS01 HEC ? GO:0005515 ... P00044 35428021
    4087 7mri:C (2.46) BS01 HEC ? GO:0005515 ... P00044 35428021
    4088 7mri:E (2.46) BS01 HEC ? GO:0005515 ... P00044 35428021
    4089 7n4f:A (1.8) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4090 7n4f:C (1.8) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4091 7n4g:A (1.93) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4092 7n4g:C (1.93) BS01 HEC ? GO:0005506 ... P0ABE7 35236987
    4093 7nqm:A (1.6) BS01 HEC 1.14.19.70 GO:0004497 ... P9WPP7 35065413
    4094 7nqo:A (1.6) BS01 HEC 1.14.19.70 GO:0004497 ... P9WPP7 35065413
    4095 7o0u:C (2.35) BS02 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4096 7o0u:C (2.35) BS03 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4097 7o0u:C (2.35) BS04 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4098 7o0u:C (2.35) BS05 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4099 7o0v:C (2.5) BS03 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4100 7o0v:C (2.5) BS04 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4101 7o0v:C (2.5) BS05 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4102 7o0v:C (2.5) BS06 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4103 7o0w:C (2.47) BS02 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4104 7o0w:C (2.47) BS03 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4105 7o0w:C (2.47) BS04 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4106 7o0w:C (2.47) BS05 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4107 7o0x:C (2.44) BS02 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4108 7o0x:C (2.44) BS03 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4109 7o0x:C (2.44) BS04 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4110 7o0x:C (2.44) BS05 HEC ? GO:0005506 ... A0A143BHR6 35171663
    4111 7o37:D (3.2) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4112 7o37:O (3.2) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4113 7o38:A (3.0) BS01 HEC ? GO:0005506 ... Q30JB4 34471748
    4114 7o3c:D (3.3) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4115 7o3c:O (3.3) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4116 7o3e:D (3.6) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4117 7o3e:O (3.6) BS02 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4118 7o3h:D (2.6) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4119 7o3h:O (2.6) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4120 7o7g:A (1.6) BS01 HEC ? N/A Q8EG34 34556577
    4121 7o7g:A (1.6) BS02 HEC ? N/A Q8EG34 34556577
    4122 7o7g:A (1.6) BS03 HEC ? N/A Q8EG34 34556577
    4123 7o7g:A (1.6) BS04 HEC ? N/A Q8EG34 34556577
    4124 7o7g:A (1.6) BS05 HEC ? N/A Q8EG34 34556577
    4125 7o7g:A (1.6) BS06 HEC ? N/A Q8EG34 34556577
    4126 7o7g:A (1.6) BS07 HEC ? N/A Q8EG34 34556577
    4127 7o7g:A (1.6) BS08 HEC ? N/A Q8EG34 34556577
    4128 7o7g:A (1.6) BS09 HEC ? N/A Q8EG34 34556577
    4129 7o7g:A (1.6) BS10 HEC ? N/A Q8EG34 34556577
    4130 7o9u:A (-1.00) BS01 HEC N/A GO:0009055 ... N/A 36077365
    4131 7pr2:A (1.73) BS01 HEC ? GO:0005515 ... P00044 35529063
    4132 7pr2:B (1.73) BS01 HEC ? GO:0005515 ... P00044 35529063
    4133 7pr3:A (2.37) BS01 HEC ? GO:0005515 ... P00044 35529063
    4134 7pr3:B (2.37) BS01 HEC ? GO:0005515 ... P00044 35529063
    4135 7pr3:C (2.37) BS03 HEC ? GO:0005515 ... P00044 35529063
    4136 7pr3:D (2.37) BS03 HEC ? GO:0005515 ... P00044 35529063
    4137 7pr4:A (1.32) BS01 HEC ? GO:0005515 ... P00044 35529063
    4138 7q21:C (2.9) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 34910901
    4139 7q21:C (2.9) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 34910901
    4140 7q21:L (2.9) BS03 HEC ? N/A Q8NMB4 34910901
    4141 7q21:c (2.9) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 34910901
    4142 7q21:c (2.9) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 34910901
    4143 7q7p:CCC (2.4) BS01 HEC ? GO:0005506 ... P07173 35647917
    4144 7q7p:CCC (2.4) BS02 HEC ? GO:0005506 ... P07173 35647917
    4145 7q7p:CCC (2.4) BS03 HEC ? GO:0005506 ... P07173 35647917
    4146 7q7p:CCC (2.4) BS04 HEC ? GO:0005506 ... P07173 35647917
    4147 7q7q:CCC (2.25) BS01 HEC ? GO:0005506 ... P07173 35647917
    4148 7q7q:CCC (2.25) BS02 HEC ? GO:0005506 ... P07173 35647917
    4149 7q7q:CCC (2.25) BS03 HEC ? GO:0005506 ... P07173 35647917
    4150 7q7q:CCC (2.25) BS04 HEC ? GO:0005506 ... P07173 35647917
    4151 7qhm:C (2.8) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4152 7qhm:C (2.8) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4153 7qhm:H (2.8) BS02 HEC ? N/A Q8NMB4 35087070
    4154 7qhm:P (2.8) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4155 7qhm:P (2.8) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4156 7qhm:U (2.8) BS02 HEC ? N/A Q8NMB4 35087070
    4157 7qho:C (3.1) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4158 7qho:C (3.1) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4159 7qho:H (3.1) BS03 HEC ? N/A Q8NMB4 35087070
    4160 7qho:P (3.1) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4161 7qho:P (3.1) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    4162 7qho:U (3.1) BS02 HEC ? N/A Q8NMB4 35087070
    4163 7qq2:A (2.1) BS03 HEC 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    4164 7qrm:A (2.7) BS03 HEC ? GO:0009055 ... P00165 36638176
    4165 7qrm:C (2.7) BS01 HEC ? GO:0005506 ... P16013 36638176
    4166 7qrm:I (2.7) BS04 HEC ? GO:0009055 ... P00165 36638176
    4167 7qrm:K (2.7) BS01 HEC ? GO:0005506 ... P16013 36638176
    4168 7qth:A (1.9) BS01 HEC ? N/A Q8EG34 36645302
    4169 7qth:A (1.9) BS02 HEC ? N/A Q8EG34 36645302
    4170 7qth:A (1.9) BS03 HEC ? N/A Q8EG34 36645302
    4171 7qth:A (1.9) BS04 HEC ? N/A Q8EG34 36645302
    4172 7qth:A (1.9) BS05 HEC ? N/A Q8EG34 36645302
    4173 7qth:A (1.9) BS06 HEC ? N/A Q8EG34 36645302
    4174 7qth:A (1.9) BS07 HEC ? N/A Q8EG34 36645302
    4175 7qth:A (1.9) BS08 HEC ? N/A Q8EG34 36645302
    4176 7qth:A (1.9) BS09 HEC ? N/A Q8EG34 36645302
    4177 7qth:A (1.9) BS10 HEC ? N/A Q8EG34 36645302
    4178 7qzr:A (2.18) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 36150500
    4179 7qzr:B (2.18) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 36150500
    4180 7qzr:C (2.18) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 36150500
    4181 7qzr:D (2.18) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 36150500
    4182 7qzr:F (2.18) BS01 HEC ? N/A Q2G0X2 36150500
    4183 7r0w:C (2.8) BS02 HEC ? GO:0005506 ... P26287 35726684
    4184 7r0w:K (2.8) BS02 HEC ? GO:0005506 ... P26287 35726684
    4185 7r2u:A (1.5) BS03 HEC 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    4186 7r3v:D (3.2) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 35892964
    4187 7rf1:V (1.89) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4188 7rf1:v (1.89) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4189 7rf2:V (2.08) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4190 7rf2:v (2.08) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4191 7rf3:V (2.26) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4192 7rf3:v (2.26) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4193 7rf4:V (2.27) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4194 7rf4:v (2.27) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4195 7rf5:V (2.23) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4196 7rf5:v (2.23) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4197 7rf6:V (2.01) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4198 7rf6:v (2.01) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4199 7rf7:V (2.09) BS01 HEC ? GO:0005506 ... P0A386 34764256
    4200 7rf7:v (2.09) BS01 HEC ? GO:0005506 ... P0A386 34764256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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