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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 6w1u:v (2.09) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3802 6w1v:E (2.09) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3803 6w1v:F (2.09) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3804 6w1v:V (2.09) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3805 6w1v:e (2.09) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3806 6w1v:f (2.09) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3807 6w1v:v (2.09) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3808 6w6n:A (2.25) BS01 HEC ? GO:0046872 ... F9ZFJ0 32525655
    3809 6w6n:A (2.25) BS02 HEC ? GO:0046872 ... F9ZFJ0 32525655
    3810 6w6n:B (2.25) BS01 HEC ? GO:0046872 ... F9ZFJ0 32525655
    3811 6w6n:B (2.25) BS02 HEC ? GO:0046872 ... F9ZFJ0 32525655
    3812 6wxu:A (2.7) BS03 HEC 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3813 6wxu:A (2.7) BS04 HEC 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3814 6wxu:C (2.7) BS03 HEC 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3815 6wxu:C (2.7) BS04 HEC 1.6.3.1 GO:0004601 ... A2AQ92 32929281
    3816 6wxz:A (2.226) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3817 6wxz:B (2.226) BS03 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3818 6wxz:D (2.226) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3819 6wxz:E (2.226) BS03 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3820 6wy0:A (2.799) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3821 6wy0:B (2.799) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3822 6wy0:D (2.799) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3823 6wy0:E (2.799) BS03 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3824 6wy0:F (2.799) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3825 6wy0:G (2.799) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3826 6wy0:H (2.799) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3827 6wy0:I (2.799) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3828 6wy5:A (2.898) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3829 6wy5:B (2.898) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3830 6wy5:D (2.898) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3831 6wy5:E (2.898) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3832 6wy7:A (2.089) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3833 6wy7:B (2.089) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3834 6wy7:D (2.089) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3835 6wy7:E (2.089) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3836 6wyd:A (2.55) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3837 6wyd:B (2.55) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3838 6wyd:D (2.55) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3839 6wyd:E (2.55) BS03 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3840 6wyd:F (2.55) BS01 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3841 6wyd:G (2.55) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3842 6wyd:H (2.55) BS02 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3843 6wyd:I (2.55) BS05 HEC 1.11.2.2 GO:0004601 ... P05164 33007547
    3844 6wyu:A (1.76) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3845 6wyu:B (1.76) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3846 6wyu:C (1.76) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3847 6wz0:A (1.7) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3848 6wz0:B (1.7) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3849 6wz0:C (1.7) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3850 6wz1:A (1.999) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3851 6wz1:B (1.999) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3852 6wz1:C (1.999) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3853 6wz2:A (2.0006) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3854 6wz2:B (2.0006) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3855 6wz2:C (2.0006) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3856 6wz3:A (1.8) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3857 6wz3:B (1.8) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3858 6wz3:C (1.8) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3859 6wz7:A (2.3) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3860 6wz7:B (2.3) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3861 6wz7:C (2.3) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3862 6wza:A (2.5) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3863 6wza:B (2.5) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3864 6wza:C (2.5) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3865 6wzc:A (2.195) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3866 6x7e:A (1.9987) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3867 6x7e:B (1.9987) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3868 6x7e:C (1.9987) BS02 HEC ? GO:0005506 ... P0ABE7 32830423
    3869 6x8x:A (2.505) BS01 HEC ? GO:0005506 ... P0ABE7 32830423
    3870 6xcx:A (2.25203) BS01 HEC 1.14.14.47 GO:0004517 ... O34453 N/A
    3871 6xi0:C (3.3) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3872 6xi0:C (3.3) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3873 6xi0:D (3.3) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3874 6xi0:P (3.3) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3875 6xi0:P (3.3) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3876 6xi0:Q (3.3) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3877 6xkt:C (3.75) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3878 6xkt:C (3.75) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3879 6xkt:D (3.75) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3880 6xkt:P (3.75) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3881 6xkt:P (3.75) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3882 6xkt:Q (3.75) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3883 6xku:C (4.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3884 6xku:C (4.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3885 6xku:D (4.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3886 6xku:P (4.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3887 6xku:P (4.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3888 6xku:Q (4.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3889 6xkv:C (3.5) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3890 6xkv:C (3.5) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3891 6xkv:D (3.5) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3892 6xkv:P (3.5) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3893 6xkv:P (3.5) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3894 6xkv:Q (3.5) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3895 6xkw:C (5.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3896 6xkw:C (5.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3897 6xkw:D (5.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3898 6xkw:P (5.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3899 6xkw:P (5.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3900 6xkw:Q (5.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3901 6xkw:n (5.2) BS02 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3902 6xkw:n (5.2) BS03 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3903 6xkw:o (5.2) BS01 HEC 1.9.3.1 GO:0009055 ... D5ARP5 33568648
    3904 6xkw:p (5.2) BS01 HEC ? GO:0005515 ... D5ARP7 33568648
    3905 6xkw:p (5.2) BS02 HEC ? GO:0005515 ... D5ARP7 33568648
    3906 6xkx:C (6.1) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3907 6xkx:C (6.1) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3908 6xkx:D (6.1) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3909 6xkx:P (6.1) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3910 6xkx:P (6.1) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3911 6xkx:Q (6.1) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3912 6xkx:n (6.1) BS01 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3913 6xkx:n (6.1) BS02 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3914 6xkx:o (6.1) BS01 HEC 1.9.3.1 GO:0009055 ... D5ARP5 33568648
    3915 6xkx:p (6.1) BS01 HEC ? GO:0005515 ... D5ARP7
    Q05389    		 33568648
    3916 6xkx:p (6.1) BS02 HEC ? GO:0005515 ... D5ARP7
    Q05389    		 33568648
    3917 6xkz:C (7.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3918 6xkz:C (7.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3919 6xkz:D (7.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3920 6xkz:P (7.2) BS01 HEC ? GO:0005886 ... D5ANZ3 33568648
    3921 6xkz:P (7.2) BS02 HEC ? GO:0005886 ... D5ANZ3 33568648
    3922 6xkz:Q (7.2) BS01 HEC ? GO:0009055 ... D5ANZ4 33568648
    3923 6xkz:n (7.2) BS01 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3924 6xkz:n (7.2) BS02 HEC 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    3925 6xkz:o (7.2) BS01 HEC 1.9.3.1 GO:0009055 ... D5ARP5 33568648
    3926 6xkz:p (7.2) BS01 HEC ? GO:0005515 ... D5ARP7
    Q05389    		 33568648
    3927 6xkz:p (7.2) BS02 HEC ? GO:0005515 ... D5ARP7
    Q05389    		 33568648
    3928 6xnk:A (2.08) BS01 HEC ? GO:0005515 ... P99999 36346995
    3929 6xnk:C (2.08) BS01 HEC ? GO:0005515 ... P99999 36346995
    3930 6xnk:E (2.08) BS01 HEC ? GO:0005515 ... P99999 36346995
    3931 6xnk:G (2.08) BS01 HEC ? GO:0005515 ... P99999 36346995
    3932 6xvf:D (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 32626661
    3933 6xz8:A (3.0) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3934 6xz8:B (3.0) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3935 6xz8:C (3.0) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3936 6xz9:A (2.77) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3937 6xz9:B (2.77) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3938 6xz9:C (2.77) BS01 HEC 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 32530624
    3939 6y0j:A (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    3940 6y0j:B (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    3941 6y0j:C (2.7) BS01 HEC ? GO:0005515 ... P00044 N/A
    3942 6y0j:D (2.7) BS02 HEC ? GO:0005515 ... P00044 N/A
    3943 6yct:A (2.39) BS02 HEC 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    3944 6zfs:D (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 N/A
    3945 6zft:D (3.3) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 N/A
    3946 6zfu:D (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 N/A
    3947 6zhw:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3948 6zhw:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3949 6zhw:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3950 6zhw:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3951 6zi4:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3952 6zi4:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3953 6zi4:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3954 6zi4:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3955 6zi5:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3956 6zi5:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3957 6zi5:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3958 6zi5:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3959 6zi6:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3960 6zi6:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3961 6zi6:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3962 6zi6:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3963 6zi9:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3964 6zi9:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3965 6zi9:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3966 6zi9:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3967 6zia:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3968 6zia:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3969 6zia:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3970 6zia:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3971 6zid:C (2.8) BS01 HEC ? GO:0005506 ... P07173 33268896
    3972 6zid:C (2.8) BS02 HEC ? GO:0005506 ... P07173 33268896
    3973 6zid:C (2.8) BS03 HEC ? GO:0005506 ... P07173 33268896
    3974 6zid:C (2.8) BS04 HEC ? GO:0005506 ... P07173 33268896
    3975 6zsk:A (1.6) BS01 HEC ? GO:0046872 ... G1UBD5 N/A
    3976 6zsk:B (1.6) BS01 HEC ? GO:0046872 ... G1UBD5 N/A
    3977 7aba:A (1.85002) BS01 HEC N/A GO:0004497 ... N/A 33249843
    3978 7aba:B (1.85002) BS01 HEC N/A GO:0004497 ... N/A 33249843
    3979 7abb:A (1.50004) BS01 HEC N/A GO:0004497 ... N/A 33249843
    3980 7ant:A (1.52) BS01 HEC ? GO:0004497 ... Q11ZY2 N/A
    3981 7ant:B (1.52) BS01 HEC ? GO:0004497 ... Q11ZY2 N/A
    3982 7b21:AAA (1.2) BS01 HEC ? GO:0009055 ... B3PLJ6 34240737
    3983 7bbt:A (3.023) BS01 HEC ? GO:0005515 ... P00044 34054353
    3984 7bbt:B (3.023) BS01 HEC ? GO:0005515 ... P00044 34054353
    3985 7bbt:C (3.023) BS01 HEC ? GO:0005515 ... P00044 34054353
    3986 7bbt:D (3.023) BS03 HEC ? GO:0005515 ... P00044 34054353
    3987 7biu:A (1.06) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 33826799
    3988 7c90:A (2.13) BS01 HEC ? GO:0005506 ... F5SWR8 32627749
    3989 7c90:B (2.13) BS01 HEC ? GO:0005506 ... F5SWR8 32627749
    3990 7c90:C (2.13) BS01 HEC ? GO:0005506 ... F5SWR8 32627749
    3991 7c90:D (2.13) BS01 HEC ? GO:0005506 ... F5SWR8 32627749
    3992 7cji:V (2.35) BS01 HEC ? GO:0005506 ... P0A387 33953929
    3993 7cji:v (2.35) BS01 HEC ? GO:0005506 ... P0A387 33953929
    3994 7cjj:V (2.4) BS01 HEC ? GO:0005506 ... P0A387 33953929
    3995 7cjj:v (2.4) BS01 HEC ? GO:0005506 ... P0A387 33953929
    3996 7cou:E (2.25) BS01 HEC ? GO:0005506 ... P12238 33953929
    3997 7cou:F (2.25) BS01 HEC ? GO:0005506 ... P12239 33953929
    3998 7cou:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 33953929
    3999 7cou:e (2.25) BS01 HEC ? GO:0005506 ... P12238 33953929
    4000 7cou:f (2.25) BS01 HEC ? GO:0005506 ... P12239 33953929
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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