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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1gm4:A (2.05) BS03 HEC ? GO:0009055 ... Q9L915 11551953
    202 1gm4:A (2.05) BS04 HEC ? GO:0009055 ... Q9L915 11551953
    203 1gmb:A (2.0) BS01 HEC ? GO:0009055 ... Q9L915 11551953
    204 1gmb:A (2.0) BS02 HEC ? GO:0009055 ... Q9L915 11551953
    205 1gmb:A (2.0) BS03 HEC ? GO:0009055 ... Q9L915 11551953
    206 1gmb:A (2.0) BS04 HEC ? GO:0009055 ... Q9L915 11551953
    207 1gq1:A (1.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    208 1gq1:B (1.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    209 1gqa:A (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    210 1gqa:D (1.8) BS01 HEC ? GO:0005506 ... P00148 N/A
    211 1gu2:A (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    212 1gu2:B (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    213 1gu6:A (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    214 1gu6:A (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    215 1gu6:A (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    216 1gu6:A (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    217 1gu6:A (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    218 1gu6:C (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    219 1gu6:C (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    220 1gu6:C (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    221 1gu6:C (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    222 1gu6:C (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    223 1gu6:C (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    224 1gu6:E (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    225 1gu6:E (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    226 1gu6:E (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    227 1gu6:E (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    228 1gu6:E (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    229 1gu6:E (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    230 1gu6:G (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    231 1gu6:G (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    232 1gu6:G (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    233 1gu6:G (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    234 1gu6:G (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    235 1gu6:G (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    236 1gws:A (2.4) BS01 HEC ? GO:0009055 ... P24092 12467575
    237 1gws:A (2.4) BS02 HEC ? GO:0009055 ... P24092 12467575
    238 1gws:A (2.4) BS03 HEC ? GO:0009055 ... P24092 12467575
    239 1gws:A (2.4) BS04 HEC ? GO:0009055 ... P24092 12467575
    240 1gws:A (2.4) BS05 HEC ? GO:0009055 ... P24092 12467575
    241 1gws:A (2.4) BS06 HEC ? GO:0009055 ... P24092 12467575
    242 1gws:A (2.4) BS07 HEC ? GO:0009055 ... P24092 12467575
    243 1gws:A (2.4) BS08 HEC ? GO:0009055 ... P24092 12467575
    244 1gws:A (2.4) BS09 HEC ? GO:0009055 ... P24092 12467575
    245 1gws:A (2.4) BS10 HEC ? GO:0009055 ... P24092 12467575
    246 1gws:A (2.4) BS11 HEC ? GO:0009055 ... P24092 12467575
    247 1gws:A (2.4) BS12 HEC ? GO:0009055 ... P24092 12467575
    248 1gws:A (2.4) BS13 HEC ? GO:0009055 ... P24092 12467575
    249 1gws:A (2.4) BS14 HEC ? GO:0009055 ... P24092 12467575
    250 1gws:A (2.4) BS15 HEC ? GO:0009055 ... P24092 12467575
    251 1gws:A (2.4) BS16 HEC ? GO:0009055 ... P24092 12467575
    252 1gx7:A (-1.00) BS05 HEC 1.12.7.2 N/A P07598 12885397
    253 1gx7:E (-1.00) BS01 HEC ? GO:0009061 ... P00131 12885397
    254 1gx7:E (-1.00) BS02 HEC ? GO:0009061 ... P00131 12885397
    255 1gx7:E (-1.00) BS03 HEC ? GO:0009061 ... P00131 12885397
    256 1gx7:E (-1.00) BS04 HEC ? GO:0009061 ... P00131 12885397
    257 1gyo:A (1.2) BS01 HEC ? GO:0009055 ... Q9R638 12657783
    258 1gyo:A (1.2) BS02 HEC ? GO:0009055 ... Q9R638 12657783
    259 1gyo:A (1.2) BS03 HEC ? GO:0009055 ... Q9R638 12657783
    260 1gyo:A (1.2) BS04 HEC ? GO:0009055 ... Q9R638 12657783
    261 1gyo:B (1.2) BS01 HEC ? GO:0009055 ... Q9R638 12657783
    262 1gyo:B (1.2) BS02 HEC ? GO:0009055 ... Q9R638 12657783
    263 1gyo:B (1.2) BS03 HEC ? GO:0009055 ... Q9R638 12657783
    264 1gyo:B (1.2) BS04 HEC ? GO:0009055 ... Q9R638 12657783
    265 1h21:A (2.5) BS01 HEC ? GO:0009061 ... P81040 12589573
    266 1h21:A (2.5) BS02 HEC ? GO:0009061 ... P81040 12589573
    267 1h21:A (2.5) BS03 HEC ? GO:0009061 ... P81040 12589573
    268 1h21:A (2.5) BS04 HEC ? GO:0009061 ... P81040 12589573
    269 1h21:B (2.5) BS01 HEC ? GO:0009061 ... P81040 12589573
    270 1h21:B (2.5) BS02 HEC ? GO:0009061 ... P81040 12589573
    271 1h21:B (2.5) BS03 HEC ? GO:0009061 ... P81040 12589573
    272 1h21:B (2.5) BS04 HEC ? GO:0009061 ... P81040 12589573
    273 1h21:C (2.5) BS01 HEC ? GO:0009061 ... P81040 12589573
    274 1h21:C (2.5) BS02 HEC ? GO:0009061 ... P81040 12589573
    275 1h21:C (2.5) BS03 HEC ? GO:0009061 ... P81040 12589573
    276 1h21:C (2.5) BS04 HEC ? GO:0009061 ... P81040 12589573
    277 1h21:D (2.5) BS01 HEC ? GO:0009061 ... P81040 12589573
    278 1h21:D (2.5) BS02 HEC ? GO:0009061 ... P81040 12589573
    279 1h21:D (2.5) BS03 HEC ? GO:0009061 ... P81040 12589573
    280 1h21:D (2.5) BS04 HEC ? GO:0009061 ... P81040 12589573
    281 1h29:A (2.51) BS01 HEC ? GO:0009055 ... P24092 12356749
    282 1h29:A (2.51) BS02 HEC ? GO:0009055 ... P24092 12356749
    283 1h29:A (2.51) BS03 HEC ? GO:0009055 ... P24092 12356749
    284 1h29:A (2.51) BS04 HEC ? GO:0009055 ... P24092 12356749
    285 1h29:A (2.51) BS05 HEC ? GO:0009055 ... P24092 12356749
    286 1h29:A (2.51) BS06 HEC ? GO:0009055 ... P24092 12356749
    287 1h29:A (2.51) BS07 HEC ? GO:0009055 ... P24092 12356749
    288 1h29:A (2.51) BS08 HEC ? GO:0009055 ... P24092 12356749
    289 1h29:A (2.51) BS09 HEC ? GO:0009055 ... P24092 12356749
    290 1h29:A (2.51) BS10 HEC ? GO:0009055 ... P24092 12356749
    291 1h29:A (2.51) BS11 HEC ? GO:0009055 ... P24092 12356749
    292 1h29:A (2.51) BS12 HEC ? GO:0009055 ... P24092 12356749
    293 1h29:A (2.51) BS13 HEC ? GO:0009055 ... P24092 12356749
    294 1h29:A (2.51) BS14 HEC ? GO:0009055 ... P24092 12356749
    295 1h29:A (2.51) BS15 HEC ? GO:0009055 ... P24092 12356749
    296 1h29:A (2.51) BS16 HEC ? GO:0009055 ... P24092 12356749
    297 1h29:B (2.51) BS01 HEC ? GO:0009055 ... P24092 12356749
    298 1h29:B (2.51) BS02 HEC ? GO:0009055 ... P24092 12356749
    299 1h29:B (2.51) BS03 HEC ? GO:0009055 ... P24092 12356749
    300 1h29:B (2.51) BS04 HEC ? GO:0009055 ... P24092 12356749
    301 1h29:B (2.51) BS05 HEC ? GO:0009055 ... P24092 12356749
    302 1h29:B (2.51) BS06 HEC ? GO:0009055 ... P24092 12356749
    303 1h29:B (2.51) BS07 HEC ? GO:0009055 ... P24092 12356749
    304 1h29:B (2.51) BS08 HEC ? GO:0009055 ... P24092 12356749
    305 1h29:B (2.51) BS09 HEC ? GO:0009055 ... P24092 12356749
    306 1h29:B (2.51) BS10 HEC ? GO:0009055 ... P24092 12356749
    307 1h29:B (2.51) BS11 HEC ? GO:0009055 ... P24092 12356749
    308 1h29:B (2.51) BS12 HEC ? GO:0009055 ... P24092 12356749
    309 1h29:B (2.51) BS13 HEC ? GO:0009055 ... P24092 12356749
    310 1h29:B (2.51) BS14 HEC ? GO:0009055 ... P24092 12356749
    311 1h29:B (2.51) BS15 HEC ? GO:0009055 ... P24092 12356749
    312 1h29:B (2.51) BS16 HEC ? GO:0009055 ... P24092 12356749
    313 1h29:C (2.51) BS01 HEC ? GO:0009055 ... P24092 12356749
    314 1h29:C (2.51) BS02 HEC ? GO:0009055 ... P24092 12356749
    315 1h29:C (2.51) BS03 HEC ? GO:0009055 ... P24092 12356749
    316 1h29:C (2.51) BS04 HEC ? GO:0009055 ... P24092 12356749
    317 1h29:C (2.51) BS05 HEC ? GO:0009055 ... P24092 12356749
    318 1h29:C (2.51) BS06 HEC ? GO:0009055 ... P24092 12356749
    319 1h29:C (2.51) BS07 HEC ? GO:0009055 ... P24092 12356749
    320 1h29:C (2.51) BS08 HEC ? GO:0009055 ... P24092 12356749
    321 1h29:C (2.51) BS09 HEC ? GO:0009055 ... P24092 12356749
    322 1h29:C (2.51) BS10 HEC ? GO:0009055 ... P24092 12356749
    323 1h29:C (2.51) BS11 HEC ? GO:0009055 ... P24092 12356749
    324 1h29:C (2.51) BS12 HEC ? GO:0009055 ... P24092 12356749
    325 1h29:C (2.51) BS13 HEC ? GO:0009055 ... P24092 12356749
    326 1h29:C (2.51) BS14 HEC ? GO:0009055 ... P24092 12356749
    327 1h29:C (2.51) BS15 HEC ? GO:0009055 ... P24092 12356749
    328 1h29:C (2.51) BS16 HEC ? GO:0009055 ... P24092 12356749
    329 1h29:D (2.51) BS01 HEC ? GO:0009055 ... P24092 12356749
    330 1h29:D (2.51) BS02 HEC ? GO:0009055 ... P24092 12356749
    331 1h29:D (2.51) BS03 HEC ? GO:0009055 ... P24092 12356749
    332 1h29:D (2.51) BS04 HEC ? GO:0009055 ... P24092 12356749
    333 1h29:D (2.51) BS05 HEC ? GO:0009055 ... P24092 12356749
    334 1h29:D (2.51) BS06 HEC ? GO:0009055 ... P24092 12356749
    335 1h29:D (2.51) BS07 HEC ? GO:0009055 ... P24092 12356749
    336 1h29:D (2.51) BS08 HEC ? GO:0009055 ... P24092 12356749
    337 1h29:D (2.51) BS09 HEC ? GO:0009055 ... P24092 12356749
    338 1h29:D (2.51) BS10 HEC ? GO:0009055 ... P24092 12356749
    339 1h29:D (2.51) BS11 HEC ? GO:0009055 ... P24092 12356749
    340 1h29:D (2.51) BS12 HEC ? GO:0009055 ... P24092 12356749
    341 1h29:D (2.51) BS13 HEC ? GO:0009055 ... P24092 12356749
    342 1h29:D (2.51) BS14 HEC ? GO:0009055 ... P24092 12356749
    343 1h29:D (2.51) BS15 HEC ? GO:0009055 ... P24092 12356749
    344 1h29:D (2.51) BS16 HEC ? GO:0009055 ... P24092 12356749
    345 1h31:A (2.55) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    346 1h31:A (2.55) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    347 1h31:B (2.55) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    348 1h31:C (2.55) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    349 1h31:C (2.55) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    350 1h31:D (2.55) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    351 1h31:E (2.55) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    352 1h31:E (2.55) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    353 1h31:F (2.55) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    354 1h31:G (2.55) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    355 1h31:G (2.55) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    356 1h31:H (2.55) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    357 1h32:A (1.5) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    358 1h32:A (1.5) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    359 1h32:B (1.5) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    360 1h33:A (1.75) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    361 1h33:A (1.75) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 12411478
    362 1h33:B (1.75) BS01 HEC ? GO:0009055 ... Q939U4 12411478
    363 1h9x:A (2.1) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    364 1h9x:B (2.1) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    365 1h9y:A (2.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    366 1h9y:B (2.4) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    367 1hcm:A (2.5) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    368 1hcm:B (2.5) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    369 1hh5:A (1.9) BS01 HEC ? GO:0009055 ... P00137 11320307
    370 1hh5:A (1.9) BS02 HEC ? GO:0009055 ... P00137 11320307
    371 1hh5:A (1.9) BS03 HEC ? GO:0009055 ... P00137 11320307
    372 1hh7:A (1.4) BS01 HEC ? GO:0009055 ... P00091 11092951
    373 1hj3:A (1.6) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    374 1hj3:B (1.6) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    375 1hj4:A (1.6) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    376 1hj4:B (1.6) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    377 1hj5:A (1.46) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    378 1hj5:B (1.46) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    379 1hrc:A (1.9) BS01 HEC ? GO:0005515 ... P00004 2166170
    380 1hzu:A (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11563915
    381 1hzv:A (2.83) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11563915
    382 1i54:A (1.5) BS01 HEC ? GO:0005739 ... P81459 11296248
    383 1i54:B (1.5) BS01 HEC ? GO:0005739 ... P81459 11296248
    384 1i55:A (2.0) BS01 HEC ? GO:0005739 ... P81459 11296248
    385 1i55:B (2.0) BS01 HEC ? GO:0005739 ... P81459 11296248
    386 1i5t:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 11941512
    387 1i6d:A (-1.00) BS01 HEC ? GO:0009055 ... P54820 11591150
    388 1i6e:A (-1.00) BS01 HEC ? GO:0009055 ... P54820 11591150
    389 1i8o:A (1.15) BS01 HEC ? GO:0009055 ... P00091 11742117
    390 1i8p:A (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    391 1i8p:B (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    392 1i8p:C (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    393 1i8p:D (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    394 1io3:A (1.9) BS01 HEC ? GO:0009055 ... P00083 11240122
    395 1iqc:A (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    396 1iqc:A (1.8) BS04 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    397 1iqc:B (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    398 1iqc:B (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    399 1iqc:C (1.8) BS02 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    400 1iqc:C (1.8) BS03 HEC 1.11.1.5 GO:0004130 ... P55929 11695895
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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