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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 4q5c:A (1.62) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2402 4q5c:A (1.62) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2403 4q5c:A (1.62) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2404 4q5c:A (1.62) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2405 4q5c:A (1.62) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2406 4q5c:A (1.62) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2407 4q5c:A (1.62) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2408 4q5c:B (1.62) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2409 4q5c:B (1.62) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2410 4q5c:B (1.62) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2411 4q5c:B (1.62) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2412 4q5c:B (1.62) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2413 4q5c:B (1.62) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2414 4q5c:B (1.62) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2415 4q5c:B (1.62) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    2416 4qo5:A (1.697) BS01 HEC ? GO:0046872 ... A8AB33 27586496
    2417 4qo5:A (1.697) BS02 HEC ? GO:0046872 ... A8AB33 27586496
    2418 4qo5:A (1.697) BS03 HEC ? GO:0046872 ... A8AB33 27586496
    2419 4qo5:A (1.697) BS04 HEC ? GO:0046872 ... A8AB33 27586496
    2420 4qo5:A (1.697) BS05 HEC ? GO:0046872 ... A8AB33 27586496
    2421 4qo5:A (1.697) BS06 HEC ? GO:0046872 ... A8AB33 27586496
    2422 4qo5:A (1.697) BS07 HEC ? GO:0046872 ... A8AB33 27586496
    2423 4qo5:A (1.697) BS08 HEC ? GO:0046872 ... A8AB33 27586496
    2424 4rsz:A (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2425 4rsz:B (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2426 4rsz:C (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2427 4rsz:D (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2428 4rsz:E (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2429 4rsz:F (2.19) BS01 HEC ? GO:0005515 ... P00004 25567806
    2430 4rwm:A (1.8) BS07 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2431 4rwm:A (1.8) BS08 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2432 4rwm:A (1.8) BS09 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2433 4rwm:A (1.8) BS10 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2434 4rwm:A (1.8) BS11 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2435 4rwm:A (1.8) BS12 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2436 4rwm:A (1.8) BS13 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2437 4rwm:A (1.8) BS14 HEC 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    2438 4u3f:D (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    2439 4u3f:Q (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    2440 4u9d:A (2.5) BS01 HEC ? GO:0005506 ... P0ABE7 25525249
    2441 4u9d:B (2.5) BS02 HEC ? GO:0005506 ... P0ABE7 25525249
    2442 4u9d:C (2.5) BS04 HEC ? GO:0005506 ... P0ABE7 25525249
    2443 4u9d:D (2.5) BS03 HEC ? GO:0005506 ... P0ABE7 25525249
    2444 4u9e:A (2.8) BS01 HEC ? GO:0005506 ... P0ABE7 25525249
    2445 4ub6:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    2446 4ub6:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    2447 4ub8:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    2448 4ub8:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    2449 4ulv:A (1.29) BS01 HEC ? GO:0005506 ... Q07Z15 25792378
    2450 4ulv:B (1.29) BS01 HEC ? GO:0005506 ... Q07Z15 25792378
    2451 4v2k:A (1.29) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    2452 4v2k:A (1.29) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673696
    2453 4wgy:A (1.48) BS01 HEC ? GO:0005506 ... P00138 N/A
    2454 4wgz:A (1.11) BS01 HEC ? GO:0005506 ... P00138 N/A
    2455 4wjy:A (2.15) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2456 4wjy:A (2.15) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2457 4wjy:A (2.15) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2458 4wjy:A (2.15) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2459 4wjy:A (2.15) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2460 4wjy:A (2.15) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2461 4wjy:B (2.15) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2462 4wjy:B (2.15) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2463 4wjy:B (2.15) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2464 4wjy:B (2.15) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2465 4wjy:B (2.15) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2466 4wjy:B (2.15) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 25658043
    2467 4wq7:A (1.98) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2468 4wq7:A (1.98) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2469 4wq8:A (1.3989) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2470 4wq8:A (1.3989) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2471 4wq9:A (1.47) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2472 4wq9:A (1.47) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2473 4wqa:A (1.64) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2474 4wqa:A (1.64) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2475 4wqb:A (1.5013) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2476 4wqb:A (1.5013) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2477 4wqc:A (1.56) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2478 4wqc:A (1.56) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2479 4wqd:A (1.22) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2480 4wqd:A (1.22) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2481 4wqe:A (1.4) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2482 4wqe:A (1.4) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    2483 4xxl:A (1.47) BS01 HEC ? GO:0009055 ... D5CN26 25972843
    2484 4xyd:A (2.85) BS04 HEC 1.7.2.5 GO:0004129 ... Q16A04 27185533
    2485 4xyd:B (2.85) BS03 HEC 1.7.2.5 GO:0009055 ... Q16A03 27185533
    2486 4y5r:A (2.8) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    2487 4y5r:A (2.8) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    2488 4y5r:B (2.8) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    2489 4y5r:B (2.8) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    2490 4zid:A (1.8) BS01 HEC ? GO:0005506 ... P15452 26838805
    2491 5agf:A (1.09) BS01 HEC ? GO:0005506 ... P00138 26100643
    2492 5aur:A (1.26) BS01 HEC ? GO:0005506 ... P15452 26451671
    2493 5aur:A (1.26) BS02 HEC ? GO:0005506 ... P15452 26451671
    2494 5aur:C (1.26) BS01 HEC ? GO:0005506 ... P15452 26451671
    2495 5aur:C (1.26) BS02 HEC ? GO:0005506 ... P15452 26451671
    2496 5aur:E (1.26) BS01 HEC ? GO:0005506 ... P15452 26451671
    2497 5aur:E (1.26) BS02 HEC ? GO:0005506 ... P15452 26451671
    2498 5aur:G (1.26) BS01 HEC ? GO:0005506 ... P15452 26451671
    2499 5aur:G (1.26) BS02 HEC ? GO:0005506 ... P15452 26451671
    2500 5aus:A (1.3) BS01 HEC ? GO:0005506 ... P15452 26451671
    2501 5aus:A (1.3) BS02 HEC ? GO:0005506 ... P15452 26451671
    2502 5aus:C (1.3) BS01 HEC ? GO:0005506 ... P15452 26451671
    2503 5aus:C (1.3) BS02 HEC ? GO:0005506 ... P15452 26451671
    2504 5awi:A (1.85) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    2505 5awi:A (1.85) BS03 HEC ? GO:0005506 ... P0ABE7 N/A
    2506 5awi:B (1.85) BS01 HEC ? GO:0005506 ... P0ABE7 N/A
    2507 5awi:B (1.85) BS02 HEC ? GO:0005506 ... P0ABE7 N/A
    2508 5b3i:A (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    2509 5b3i:B (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    2510 5b3i:C (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    2511 5b3i:D (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    2512 5b5e:V (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    2513 5b5e:v (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    2514 5b66:V (1.85) BS01 HEC ? GO:0005506 ... P0A387 28102667
    2515 5b66:v (1.85) BS01 HEC ? GO:0005506 ... P0A387 28102667
    2516 5b6q:A (1.78) BS01 HEC ? GO:0005506 ... D4ZE39 27648635
    2517 5b6q:B (1.78) BS01 HEC ? GO:0005506 ... D4ZE39 27648635
    2518 5b82:A (2.0) BS01 HEC ? N/A Q8DM36 28428249
    2519 5c0z:A (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    2520 5c0z:B (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    2521 5c0z:C (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    2522 5c0z:D (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    2523 5c2v:A (2.7) BS04 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2524 5c2v:A (2.7) BS05 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2525 5c2v:C (2.7) BS04 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2526 5c2v:C (2.7) BS05 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2527 5c2v:D (2.7) BS03 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2528 5c2v:D (2.7) BS04 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2529 5c2v:F (2.7) BS04 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2530 5c2v:F (2.7) BS05 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2531 5c2w:A (3.2) BS04 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2532 5c2w:A (3.2) BS05 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2533 5c2w:C (3.2) BS04 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2534 5c2w:C (3.2) BS05 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2535 5c2w:D (3.2) BS03 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2536 5c2w:D (3.2) BS04 HEC 1.7.2.7 GO:0016491 ... Q1Q0T2 26479033
    2537 5c2w:F (3.2) BS04 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2538 5c2w:F (3.2) BS05 HEC 1.7.2.7 GO:0004130 ... Q1Q0T3 26479033
    2539 5c9m:A (1.362) BS01 HEC ? GO:0002931 ... P62898 N/A
    2540 5c9m:B (1.362) BS01 HEC ? GO:0002931 ... P62898 N/A
    2541 5c9m:C (1.362) BS02 HEC ? GO:0002931 ... P62898 N/A
    2542 5c9m:D (1.362) BS02 HEC ? GO:0002931 ... P62898 N/A
    2543 5cib:A (3.011) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2544 5cib:B (3.011) BS01 HEC ? GO:0005515 ... P00044 27499202
    2545 5cib:C (3.011) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2546 5cib:D (3.011) BS01 HEC ? GO:0005515 ... P00044 27499202
    2547 5cic:A (2.103) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2548 5cic:B (2.103) BS01 HEC ? GO:0005515 ... P00044 27499202
    2549 5cic:C (2.103) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2550 5cic:D (2.103) BS01 HEC ? GO:0005515 ... P00044 27499202
    2551 5cid:A (2.763) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2552 5cid:B (2.763) BS01 HEC ? GO:0005515 ... P00044 27499202
    2553 5cid:C (2.763) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2554 5cid:D (2.763) BS01 HEC ? GO:0005515 ... P00044 27499202
    2555 5cie:A (2.6) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2556 5cie:B (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    2557 5cie:C (2.6) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2558 5cie:D (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    2559 5cif:A (2.01) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2560 5cif:B (2.01) BS01 HEC ? GO:0005515 ... P00044 27499202
    2561 5cif:C (2.01) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2562 5cif:C (2.01) BS02 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2563 5cif:D (2.01) BS01 HEC ? GO:0005515 ... P00044 27499202
    2564 5cig:A (2.06) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2565 5cig:B (2.06) BS01 HEC ? GO:0005515 ... P00044 27499202
    2566 5cig:C (2.06) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2567 5cig:D (2.06) BS01 HEC ? GO:0005515 ... P00044 27499202
    2568 5cih:A (2.6) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2569 5cih:A (2.6) BS02 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2570 5cih:B (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    2571 5cih:C (2.6) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 27499202
    2572 5cih:D (2.6) BS01 HEC ? GO:0005515 ... P00044 27499202
    2573 5cyt:R (1.5) BS01 HEC ? GO:0005739 ... P81459 N/A
    2574 5df5:A (1.301) BS01 HEC ? GO:0002931 ... P62898 N/A
    2575 5df5:B (1.301) BS01 HEC ? GO:0002931 ... P62898 N/A
    2576 5df5:C (1.301) BS01 HEC ? GO:0002931 ... P62898 N/A
    2577 5df5:D (1.301) BS01 HEC ? GO:0002931 ... P62898 N/A
    2578 5dfs:A (1.15) BS01 HEC ? GO:0005739 ... P00003 26775610
    2579 5dfs:B (1.15) BS01 HEC ? GO:0005739 ... P00003 26775610
    2580 5djq:A (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    2581 5djq:B (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    2582 5djq:C (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    2583 5djq:C (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    2584 5djq:D (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    2585 5djq:E (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    2586 5djq:F (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    2587 5djq:F (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    2588 5djq:G (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    2589 5djq:H (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    2590 5djq:I (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    2591 5djq:I (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    2592 5djq:K (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    2593 5djq:L (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    2594 5djq:M (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    2595 5djq:M (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    2596 5exq:A (1.6) BS01 HEC ? GO:0005515 ... P99999 33480393
    2597 5exq:B (1.6) BS01 HEC ? GO:0005515 ... P99999 33480393
    2598 5gpn:P (5.4) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27654917
    2599 5gth:V (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2600 5gth:v (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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