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BioLiP
Download all results in tab-seperated text for 666 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ar1:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    2 1ar1:A (2.7) BS05 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    3 1m56:A (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    4 1m56:A (2.3) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    5 1m56:G (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    6 1m56:G (2.3) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    7 1m57:A (3.0) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    8 1m57:A (3.0) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    9 1m57:G (3.0) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    10 1m57:G (3.0) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    11 1occ:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    12 1occ:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    13 1occ:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    14 1occ:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    15 1oco:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    16 1oco:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    17 1oco:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    18 1oco:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    19 1ocr:A (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    20 1ocr:A (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    21 1ocr:N (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    22 1ocr:N (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    23 1ocz:A (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    24 1ocz:A (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    25 1ocz:N (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    26 1ocz:N (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    27 1ocz:O (2.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 9624044
    28 1qle:A (3.0) BS01 HEA 7.1.1.9 GO:0004129 ... P98002 10559205
    29 1qle:A (3.0) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 10559205
    30 1qle:B (3.0) BS01 HEA 7.1.1.9 GO:0004129 ... P08306 10559205
    31 1v54:A (1.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    32 1v54:A (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    33 1v54:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 14673090
    34 1v54:N (1.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    35 1v54:N (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    36 1v54:O (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 14673090
    37 1v55:A (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    38 1v55:A (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    39 1v55:B (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 14673090
    40 1v55:N (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    41 1v55:N (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 14673090
    42 1v55:O (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 14673090
    43 2dyr:A (1.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    44 2dyr:A (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    45 2dyr:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    46 2dyr:N (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    47 2dyr:N (1.8) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    48 2dyr:O (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    49 2dys:A (2.2) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    50 2dys:A (2.2) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    51 2dys:B (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    52 2dys:N (2.2) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    53 2dys:N (2.2) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    54 2dys:O (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    55 2eij:A (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    56 2eij:A (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    57 2eij:B (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    58 2eij:N (1.9) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    59 2eij:N (1.9) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    60 2eij:O (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    61 2eik:A (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    62 2eik:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    63 2eik:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    64 2eik:N (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    65 2eik:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    66 2eik:O (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    67 2eil:A (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    68 2eil:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    69 2eil:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    70 2eil:N (2.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    71 2eil:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    72 2eil:O (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    73 2eim:A (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    74 2eim:A (2.6) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    75 2eim:B (2.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    76 2eim:N (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    77 2eim:N (2.6) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    78 2eim:O (2.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    79 2ein:A (2.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    80 2ein:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    81 2ein:B (2.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    82 2ein:N (2.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    83 2ein:N (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17470809
    84 2ein:O (2.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17470809
    85 2gsm:A (2.0) BS07 HEA 7.1.1.9 GO:0004129 ... P33517 17050688
    86 2gsm:A (2.0) BS08 HEA 7.1.1.9 GO:0004129 ... P33517 17050688
    87 2gsm:C (2.0) BS06 HEA 7.1.1.9 GO:0004129 ... P33517 17050688
    88 2gsm:C (2.0) BS07 HEA 7.1.1.9 GO:0004129 ... P33517 17050688
    89 2occ:A (2.3) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    90 2occ:A (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    91 2occ:N (2.3) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    92 2occ:N (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    93 2y69:A (1.95) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21211513
    94 2y69:A (1.95) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21211513
    95 2y69:N (1.95) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21211513
    96 2y69:N (1.95) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21211513
    97 2ybb:L (19.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21909073
    98 2ybb:L (19.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21909073
    99 2zxw:A (2.5) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    100 2zxw:A (2.5) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    101 2zxw:B (2.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 19164527
    102 2zxw:N (2.5) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    103 2zxw:N (2.5) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    104 3abk:A (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    105 3abk:A (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    106 3abk:B (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20208153
    107 3abk:N (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    108 3abk:N (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20208153
    109 3abl:A (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    110 3abl:A (2.1) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    111 3abl:B (2.1) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 19164527
    112 3abl:N (2.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    113 3abl:N (2.1) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    114 3abm:A (1.95) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    115 3abm:A (1.95) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    116 3abm:B (1.95) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 19164527
    117 3abm:N (1.95) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    118 3abm:N (1.95) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 19164527
    119 3ag1:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    120 3ag1:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    121 3ag1:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    122 3ag1:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    123 3ag2:A (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    124 3ag2:A (1.802) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    125 3ag2:B (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    126 3ag2:N (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    127 3ag2:N (1.802) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    128 3ag2:O (1.802) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    129 3ag3:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    130 3ag3:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    131 3ag3:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    132 3ag3:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    133 3ag3:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    134 3ag3:O (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    135 3ag4:A (2.05) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    136 3ag4:A (2.05) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    137 3ag4:N (2.05) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    138 3ag4:N (2.05) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    139 3asn:A (3.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    140 3asn:A (3.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    141 3asn:N (3.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    142 3asn:N (3.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    143 3asn:O (3.0) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 21795816
    144 3aso:A (2.3) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    145 3aso:A (2.3) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    146 3aso:B (2.3) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 21795816
    147 3aso:N (2.3) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    148 3aso:N (2.3) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21795816
    149 3aso:O (2.3) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 21795816
    150 3dtu:A (2.15) BS07 HEA 7.1.1.9 GO:0004129 ... P33517 18759498
    151 3dtu:A (2.15) BS08 HEA 7.1.1.9 GO:0004129 ... P33517 18759498
    152 3dtu:C (2.15) BS06 HEA 7.1.1.9 GO:0004129 ... P33517 18759498
    153 3dtu:C (2.15) BS07 HEA 7.1.1.9 GO:0004129 ... P33517 18759498
    154 3ehb:A (2.32) BS01 HEA 7.1.1.9 GO:0004129 ... P98002 18930738
    155 3ehb:A (2.32) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 18930738
    156 3fye:A (2.15) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    157 3fye:A (2.15) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    158 3fye:C (2.15) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    159 3fye:C (2.15) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    160 3fyi:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    161 3fyi:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    162 3fyi:C (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    163 3fyi:C (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P33517 19397279
    164 3hb3:A (2.25) BS01 HEA 7.1.1.9 GO:0004129 ... P98002 19374884
    165 3hb3:A (2.25) BS02 HEA 7.1.1.9 GO:0004129 ... P98002 19374884
    166 3hb3:B (2.25) BS01 HEA 7.1.1.9 GO:0004129 ... P08306 19374884
    167 3om3:A (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    168 3om3:A (2.6) BS04 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    169 3om3:C (2.6) BS02 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    170 3om3:C (2.6) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    171 3om3:D (2.6) BS01 HEA 7.1.1.9 GO:0004129 ... Q3J5G0 21205904
    172 3oma:A (2.3) BS02 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    173 3oma:A (2.3) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    174 3oma:C (2.3) BS02 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    175 3oma:C (2.3) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    176 3omi:A (2.15) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    177 3omi:A (2.15) BS04 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    178 3omi:C (2.15) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    179 3omi:C (2.15) BS04 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    180 3omn:A (2.15) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    181 3omn:A (2.15) BS04 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    182 3omn:C (2.15) BS02 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    183 3omn:C (2.15) BS03 HEA 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    184 3wg7:A (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    185 3wg7:A (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    186 3wg7:N (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    187 3wg7:N (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    188 3x2q:A (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    189 3x2q:A (2.0) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    190 3x2q:N (2.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    191 3x2q:N (2.0) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 26057802
    192 3x2q:O (2.0) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 26057802
    193 5b1a:A (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    194 5b1a:A (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    195 5b1a:B (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    196 5b1a:N (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197 5b1a:N (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    198 5b1a:O (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    199 5b1b:A (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    200 5b1b:A (1.6) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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