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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gge:A (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    2 1gge:B (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    3 1gge:C (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    4 1gge:D (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    5 1ggj:A (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    6 1ggj:B (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    7 1ggj:C (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    8 1ggj:D (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    9 1p81:A (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    10 1p81:B (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    11 1p81:C (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    12 1p81:D (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    13 1sy7:A (1.75) BS01 HDD 1.11.1.6 GO:0004096 ... Q9C168 15342250
    14 1sy7:B (1.75) BS01 HDD 1.11.1.6 GO:0004096 ... Q9C168 15342250
    15 1ye9:A (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    16 1ye9:B (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    17 1ye9:C (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    18 1ye9:D (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    19 1ye9:E (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    20 1ye9:F (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    21 1ye9:G (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    22 1ye9:H (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    23 1ye9:I (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    24 1ye9:J (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    25 1ye9:K (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    26 1ye9:L (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    27 1ye9:M (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    28 1ye9:N (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    29 1ye9:O (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    30 1ye9:P (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    31 2iuf:A (1.71) BS01 HDD 1.11.1.6 GO:0004096 ... D9N167 17358056
    32 2iuf:E (1.71) BS01 HDD 1.11.1.6 GO:0004096 ... D9N167 17358056
    33 2xf2:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... D9N167 N/A
    34 2xf2:E (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... D9N167 N/A
    35 3p9p:A (1.5) BS04 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    36 3p9p:B (1.5) BS04 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    37 3p9p:C (1.5) BS04 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    38 3p9p:D (1.5) BS04 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    39 3p9q:A (1.48) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    40 3p9q:B (1.48) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    41 3p9q:C (1.48) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    42 3p9q:D (1.48) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    43 3p9r:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    44 3p9r:B (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    45 3p9r:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    46 3p9r:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    47 3p9s:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    48 3p9s:B (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    49 3p9s:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    50 3p9s:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    51 3pq2:A (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    52 3pq2:B (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    53 3pq2:C (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    54 3pq2:D (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    55 3pq3:A (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    56 3pq3:B (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    57 3pq3:C (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    58 3pq3:D (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    59 3pq4:A (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    60 3pq4:B (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    61 3pq4:C (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    62 3pq4:D (1.79) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    63 3pq5:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    64 3pq5:B (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    65 3pq5:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    66 3pq5:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    67 3pq6:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    68 3pq6:B (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    69 3pq6:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    70 3pq6:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    71 3pq7:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    72 3pq7:B (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    73 3pq7:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    74 3pq7:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    75 3pq8:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    76 3pq8:B (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    77 3pq8:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    78 3pq8:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 21332158
    79 4aue:A (2.7) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 23519415
    80 4aue:B (2.7) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 23519415
    81 4aue:C (2.7) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 23519415
    82 4aue:D (2.7) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 23519415
    83 4aum:A (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 23519415
    84 4aum:B (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 23519415
    85 4aum:C (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 23519415
    86 4aum:D (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 23519415
    87 4aun:A (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    88 4aun:B (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    89 4aun:C (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    90 4aun:D (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    91 4aun:E (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    92 4aun:F (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    93 4aun:G (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    94 4aun:H (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR8 23519415
    95 4b31:A (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    96 4b31:B (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    97 4b31:C (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    98 4b31:D (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    99 4b40:A (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    100 4b40:B (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    101 4b40:C (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    102 4b40:D (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    103 4b5k:A (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT9 23545640
    104 4b5k:B (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT9 23545640
    105 4b5k:C (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT9 23545640
    106 4b5k:D (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT9 23545640
    107 4b7a:A (1.95) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    108 4b7a:B (1.95) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    109 4b7a:C (1.95) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    110 4b7a:D (1.95) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 N/A
    111 4enq:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    112 4enq:B (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    113 4enq:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    114 4enq:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    115 4ens:A (1.6) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    116 4ens:B (1.6) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    117 4ens:C (1.6) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    118 4ens:D (1.6) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    119 4ent:A (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    120 4ent:B (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    121 4ent:C (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    122 4ent:D (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    123 4enu:A (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    124 4enu:B (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    125 4enu:C (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    126 4enu:D (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    127 4env:A (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    128 4env:B (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    129 4env:C (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    130 4env:D (1.7) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    131 4enw:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    132 4enw:B (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    133 4enw:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    134 4enw:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 22820098
    135 5bv2:P (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    136 5bv2:Q (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    137 5bv2:R (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    138 5bv2:S (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    139 5doq:A (3.05) BS03 HDD ? GO:0005886 ... A4IKP6 27126043
    140 5ir6:A (3.8) BS03 HDD ? GO:0005886 ... Q9Z9N1 27126043
    141 5xvz:A (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    142 5xvz:B (1.9) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    143 5xvz:C (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    144 5xvz:D (1.9) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    145 5xy4:A (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    146 5xy4:B (1.8) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    147 5xy4:C (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    148 5xy4:D (1.8) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    149 5xzm:A (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    150 5xzm:B (1.41) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    151 5xzm:C (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    152 5xzm:D (1.41) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    153 5xzn:A (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    154 5xzn:B (1.47) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    155 5xzn:C (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    156 5xzn:D (1.47) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    157 5y17:A (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    158 5y17:B (2.3) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    159 5y17:C (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    160 5y17:D (2.3) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    161 5zz1:A (1.91) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    162 5zz1:B (1.91) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    163 5zz1:C (1.91) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    164 5zz1:D (1.91) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    165 6rko:A (2.68) BS03 HDD 7.1.1.7 GO:0005515 ... P0ABJ9 31604309
    166 6rx4:A (3.3) BS04 HDD 7.1.1.7 GO:0005515 ... P0ABJ9 31723136
    167 6rx4:B (3.3) BS01 HDD 7.1.1.7 GO:0005515 ... P0ABK2 31723136
    168 6ztv:A (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    169 6ztv:B (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    170 6ztv:C (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    171 6ztv:D (1.78) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    172 6ztw:A (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    173 6ztw:B (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    174 6ztw:C (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    175 6ztw:D (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    176 6ztw:E (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    177 6ztw:F (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    178 6ztw:G (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    179 6ztw:H (1.84) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    180 6ztx:A (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    181 6ztx:B (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    182 6ztx:C (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    183 6ztx:D (1.3) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 33485289
    184 7d5i:A (2.79) BS03 HDD 1.10.3.- GO:0005886 ... A0QXA8 34330928
    185 7nkz:A (2.5) BS03 HDD ? GO:0005886 ... L7N662 34475399
    186 7nkz:B (2.5) BS01 HDD ? GO:0005886 ... O06139 34475399
    187 7ose:A (3.0) BS04 HDD 7.1.1.3 GO:0005886 ... P26459 34764272
    188 7ose:D (3.0) BS04 HDD 7.1.1.3 GO:0005886 ... P26459 34764272
    189 7oy2:C (2.06) BS04 HDD 7.1.1.3 GO:0005886 ... P26459 34873041
    190 7vn0:A (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    191 7vn0:B (1.4) BS02 HDD 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    192 7vn0:C (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    193 7vn0:D (1.4) BS01 HDD 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    194 8b4o:A (2.0) BS01 HDD ? GO:0005886 ... Q9KWL8 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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