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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ahx:A (2.0) BS02 HCI 2.6.1.1 GO:0003824 ... P00509 7664122 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    2 1ahx:B (2.0) BS02 HCI 2.6.1.1 GO:0003824 ... P00509 7664122 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    3 1ay8:B (2.3) BS02 HCI 2.6.1.57 GO:0004069 ... P95468 9665848
    4 1bxg:A (2.3) BS02 HCI 1.4.1.20 GO:0000166 ... Q59771 10029526
    5 1bxg:B (2.3) BS02 HCI 1.4.1.20 GO:0000166 ... Q59771 10029526
    6 1tog:A (2.31) BS01 HCI 2.6.1.1 GO:0003824 ... P00509 15461450 MOAD: Kd=0.6mM
    PDBbind: -logKd/Ki=3.22, Kd=0.6mM
    7 1tog:B (2.31) BS01 HCI 2.6.1.1 GO:0003824 ... P00509 15461450 MOAD: Kd=0.6mM
    PDBbind: -logKd/Ki=3.22, Kd=0.6mM
    8 1tog:B (2.31) BS02 HCI 2.6.1.1 GO:0003824 ... P00509 15461450 MOAD: Kd=0.6mM
    PDBbind: -logKd/Ki=3.22, Kd=0.6mM
    9 1toi:A (1.9) BS01 HCI 2.6.1.1 GO:0003824 ... P00509 15461450 MOAD: Kd=0.09mM
    PDBbind: -logKd/Ki=4.05, Kd=0.090mM
    10 1toj:A (1.9) BS01 HCI 2.6.1.1 GO:0003824 ... P00509 15461450 MOAD: Kd=0.41mM
    PDBbind: -logKd/Ki=3.39, Kd=0.41mM
    11 1v2f:A (2.35) BS02 HCI 2.6.1.15 GO:0005737 ... Q75WK2 14761974
    12 1v2f:A (2.35) BS03 HCI 2.6.1.15 GO:0005737 ... Q75WK2 14761974
    13 1v2f:B (2.35) BS01 HCI 2.6.1.15 GO:0005737 ... Q75WK2 14761974
    14 1v2f:B (2.35) BS03 HCI 2.6.1.15 GO:0005737 ... Q75WK2 14761974
    15 3ayi:A (1.25) BS02 HCI 1.13.12.9 GO:0000166 ... Q5W9R9 21841183 MOAD: Ki=13.9uM
    16 3ayi:B (1.25) BS02 HCI 1.13.12.9 GO:0000166 ... Q5W9R9 21841183 MOAD: Ki=13.9uM
    17 4gm7:A (2.6) BS03 HCI 1.11.1.7 GO:0004601 ... P80025 N/A
    18 4usa:A (1.13) BS06 HCI 1.2.99.7 GO:0005506 ... Q46509 25261288
    19 5ltm:A (2.413) BS01 HCI 4.3.1.24 GO:0003824 ... Q3M5Z3 29057979
    20 5ltm:A (2.413) BS02 HCI 4.3.1.24 GO:0003824 ... Q3M5Z3 29057979
    21 5ltm:B (2.413) BS01 HCI 4.3.1.24 GO:0003824 ... Q3M5Z3 29057979
    22 5ltm:B (2.413) BS02 HCI 4.3.1.24 GO:0003824 ... Q3M5Z3 29057979
    23 5vfn:A (2.389) BS01 HCI ? GO:0004623 ... Q9IAT9 28751219 PDBbind: -logKd/Ki=3.52, Kd=300uM
    24 6zgs:A (2.151) BS01 HCI ? GO:0005886 ... A0LNN5 N/A
    25 6zgs:B (2.151) BS01 HCI ? GO:0005886 ... A0LNN5 N/A
    26 7nra:AAA (1.91) BS01 HCI ? GO:0042597 ... A3K0X1 34375507
    27 7nra:BBB (1.91) BS01 HCI ? GO:0042597 ... A3K0X1 34375507
    28 7ntr:A (2.23) BS01 HCI 2.6.1.42 GO:0000082 ... P54687 36261130
    29 7ntr:A (2.23) BS03 HCI 2.6.1.42 GO:0000082 ... P54687 36261130
    30 7ntr:B (2.23) BS01 HCI 2.6.1.42 GO:0000082 ... P54687 36261130
    31 7xro:B (2.8) BS01 HCI ? GO:0006355 ... Q9RQ20 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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