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BioLiP Library
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fp1:D (1.82) BS02 HCC 2.1.1.154
    2.1.1.65    		 GO:0008168 ... P93324 11224575
    2 4rlu:A (2.198) BS01 HCC 4.2.1.59 GO:0005515 ... P9WFK1 26081470 PDBbind: -logKd/Ki=4.82, Kd=15.2uM
    3 5yx4:A (2.1) BS01 HCC 5.5.1.6 GO:0009813 ... G4U3G8 29394293
    4 6ajv:A (1.45) BS01 HCC ? N/A O60885 30565859 MOAD: Kd=9.1uM
    PDBbind: -logKd/Ki=5.04, Kd=9.1uM
    5 6ajx:A (1.887) BS01 HCC ? N/A O60885 30565859 MOAD: Kd=9.1uM
    PDBbind: -logKd/Ki=5.04, Kd=9.1uM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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