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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 17gs:A (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A
    2 17gs:B (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A
    3 1bh5:A (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    4 1bh5:A (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    5 1bh5:B (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    6 1bh5:B (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    7 1bh5:C (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    8 1bh5:C (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    9 1bh5:D (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    10 1bh5:D (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    11 1gnw:A (2.2) BS01 GTX 2.5.1.18 GO:0000325 ... P46422 8551521
    12 1gnw:A (2.2) BS02 GTX 2.5.1.18 GO:0000325 ... P46422 8551521
    13 1gnw:B (2.2) BS01 GTX 2.5.1.18 GO:0000325 ... P46422 8551521
    14 1gnw:B (2.2) BS02 GTX 2.5.1.18 GO:0000325 ... P46422 8551521
    15 1gsu:A (1.94) BS01 GTX 2.5.1.18 GO:0004364 ... P20136 9571047
    16 1gsu:B (1.94) BS01 GTX 2.5.1.18 GO:0004364 ... P20136 9571047
    17 1gwc:A (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    18 1gwc:B (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    19 1gwc:C (2.25) BS01 GTX 2.5.1.18 GO:0004364 ... O04941 12033934
    20 1k0a:A (2.5) BS01 GTX 1.11.1.9
    1.8.4.-    		 GO:0003714 ... P23202 11695904
    21 1k3l:A (1.5) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    22 1k3l:A (1.5) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    23 1k3l:B (1.5) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    24 1k3l:B (1.5) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    25 1k3y:A (1.3) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    26 1k3y:A (1.3) BS04 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    27 1k3y:B (1.3) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    28 1k3y:B (1.3) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 12211029
    29 1m9a:A (2.1) BS01 GTX 2.5.1.18 GO:0004364 ... P08515 12596270
    30 1pgt:A (1.8) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9245401
    31 1pgt:B (1.8) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9245401
    32 1pn9:A (2.0) BS01 GTX 2.5.1.18
    4.5.1.1    		 GO:0003824 ... Q93113 14646079
    33 1pn9:B (2.0) BS01 GTX 2.5.1.18
    4.5.1.1    		 GO:0003824 ... Q93113 14646079
    34 1q4j:A (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    35 1q4j:A (2.2) BS02 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    36 1q4j:B (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    37 1q4j:B (2.2) BS02 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    38 1tu8:A (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    39 1tu8:B (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    40 1tu8:C (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    41 1tu8:D (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... P46427 15640152
    42 1vf2:A (2.15) BS01 GTX 2.5.1.18 GO:0004364 ... P26697 N/A
    43 1vf2:A (2.15) BS02 GTX 2.5.1.18 GO:0004364 ... P26697 N/A
    44 1vf2:B (2.15) BS01 GTX 2.5.1.18 GO:0004364 ... P26697 N/A
    45 1vf2:B (2.15) BS02 GTX 2.5.1.18 GO:0004364 ... P26697 N/A
    46 1ydk:A (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    47 1ydk:A (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    48 1ydk:B (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    49 1ydk:B (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    50 2aaw:A (2.4) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 16385005 MOAD: Ki=35uM
    51 2aaw:C (2.4) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 16385005 MOAD: Ki=35uM
    52 2c3q:A (1.85) BS01 GTX 2.5.1.18 GO:0004364 ... P30711 16298388
    53 2c3q:B (1.85) BS01 GTX 2.5.1.18 GO:0004364 ... P30711 16298388
    54 2c3q:C (1.85) BS01 GTX 2.5.1.18 GO:0004364 ... P30711 16298388
    55 2c3q:D (1.85) BS01 GTX 2.5.1.18 GO:0004364 ... P30711 16298388
    56 2c80:A (2.3) BS01 GTX 2.5.1.18 GO:0004364 ... P30113 16777141 MOAD: Kd=4.7uM
    PDBbind: -logKd/Ki=5.33, Kd=4.7uM
    57 2c80:B (2.3) BS01 GTX 2.5.1.18 GO:0004364 ... P30113 16777141 MOAD: Kd=4.7uM
    PDBbind: -logKd/Ki=5.33, Kd=4.7uM
    58 2glr:A (2.2) BS01 GTX 2.5.1.18 GO:0000302 ... P19157 8145243
    59 2glr:B (2.2) BS01 GTX 2.5.1.18 GO:0000302 ... P19157 8145243
    60 2imk:A (1.9) BS01 GTX 2.5.1.18 GO:0003824 ... Q7PVS6 18778777
    61 2imk:B (1.9) BS01 GTX 2.5.1.18 GO:0003824 ... Q7PVS6 18778777
    62 2j9h:A (2.4) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 18177897 MOAD: Ki=410uM
    PDBbind: -logKd/Ki=3.39, Ki=410uM
    63 2j9h:B (2.4) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 18177897 MOAD: Ki=410uM
    PDBbind: -logKd/Ki=3.39, Ki=410uM
    64 2oa7:A (2.2) BS01 GTX 2.5.1.18 GO:0000302 ... P19157 N/A
    65 2oa7:B (2.2) BS01 GTX 2.5.1.18 GO:0000302 ... P19157 N/A
    66 2r3x:A (1.8) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19959275
    67 2r3x:A (1.8) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19959275
    68 2r3x:B (1.8) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19959275
    69 2r3x:B (1.8) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19959275
    70 2r6k:A (2.51) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    71 2r6k:A (2.51) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    72 2r6k:B (2.51) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    73 2r6k:B (2.51) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    74 3f63:A (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    75 3f63:B (1.8) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    76 3f6d:A (1.7) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    77 3f6d:B (1.7) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    78 3g7j:A (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    79 3g7j:B (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q9GN60 20196771
    80 3ktl:A (1.75) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    81 3ktl:A (1.75) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    82 3ktl:B (1.75) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    83 3ktl:B (1.75) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20606271
    84 3l0h:A (2.13) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20833278
    85 3l0h:A (2.13) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20833278
    86 3l0h:B (2.13) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20833278
    87 3l0h:B (2.13) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 20833278
    88 3rpn:A (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    89 3rpn:B (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    90 3rpn:C (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    91 3rpn:D (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    92 3rpn:E (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    93 3rpn:F (1.9) BS01 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    94 3rpn:F (1.9) BS02 GTX 2.5.1.18 GO:0004364 ... Q9Y2Q3 21728995
    95 4gss:A (2.5) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9166793
    96 4gss:B (2.5) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9166793
    97 4jc7:A (2.7) BS01 GTX 2.5.1.-
    4.4.1.20    		 GO:0004364 ... Q16873 24366866
    98 4jcz:A (2.75) BS01 GTX 2.5.1.-
    4.4.1.20    		 GO:0004364 ... Q16873 24366866
    99 4jrz:A (2.4) BS01 GTX 2.5.1.-
    4.4.1.20    		 GO:0004364 ... Q16873 24366866
    100 4ntf:A (2.65) BS01 GTX 2.5.1.-
    4.4.1.20    		 GO:0004464 ... Q60860 N/A
    101 5kej:A (2.35) BS01 GTX 2.5.1.18 GO:0004364 ... A0A1P8NWC2 28104507 MOAD: Kd=7.8uM
    PDBbind: -logKd/Ki=5.11, Kd=7.8uM
    102 5kej:B (2.35) BS01 GTX 2.5.1.18 GO:0004364 ... A0A1P8NWC2 28104507 MOAD: Kd=7.8uM
    PDBbind: -logKd/Ki=5.11, Kd=7.8uM
    103 6f4k:A (1.55) BS01 GTX 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    104 6f4k:A (1.55) BS02 GTX 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    105 6f4k:B (1.55) BS01 GTX 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    106 9gss:A (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    107 9gss:B (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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