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BioLiP Library
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jut:A (2.25) BS01 GTQ ? GO:0008083 ... P05230 20145243
    2 3jut:B (2.25) BS01 GTQ ? GO:0008083 ... P05230 20145243
    3 3nl1:A (2.155) BS02 GTQ 1.13.11.4 GO:0046872 ... Q67FT0 22155290
    4 3nw4:A (2.0) BS02 GTQ 1.13.11.4 GO:0046872 ... Q67FT0 23384287
    5 4e3d:A (1.6) BS02 GTQ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22531842 MOAD: ic50=5mM
    PDBbind: -logKd/Ki=2.30, IC50=5mM
    BindingDB: IC50=5000000nM, Ki=4100nM
    6 4e3d:A (1.6) BS03 GTQ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22531842 MOAD: ic50=5mM
    PDBbind: -logKd/Ki=2.30, IC50=5mM
    BindingDB: IC50=5000000nM, Ki=4100nM
    7 4fag:A (2.5) BS02 GTQ 1.13.11.4 GO:0046872 ... Q67FT0 22960182
    8 7bpc:A (2.45) BS01 GTQ ? GO:0005737 ... N1S495 32421914
    9 7bpc:C (2.45) BS01 GTQ ? GO:0005737 ... N1S495 32421914
    10 7bpc:C (2.45) BS02 GTQ ? GO:0005737 ... N1S495 32421914
    11 8zi8:A (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    12 8zi8:D (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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