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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7154 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 8u7m:G (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7002 8u7m:G (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7003 8u7m:H (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7004 8u7m:H (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7005 8u7q:A (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7006 8u7q:A (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7007 8u7q:B (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7008 8u7q:B (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7009 8u7q:C (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7010 8u7q:C (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7011 8u7q:D (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7012 8u7q:D (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7013 8u7q:E (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7014 8u7q:E (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7015 8u7q:F (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7016 8u7q:F (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7017 8u7q:G (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7018 8u7q:G (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7019 8u7q:H (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7020 8u7q:H (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7021 8u7v:A (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7022 8u7v:A (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7023 8u7v:B (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7024 8u7v:B (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7025 8u7v:C (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7026 8u7v:C (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7027 8u7v:D (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7028 8u7v:D (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7029 8u7v:E (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7030 8u7v:E (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7031 8u7v:F (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7032 8u7v:F (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7033 8u7v:G (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7034 8u7v:G (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7035 8u7v:H (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7036 8u7v:H (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    7037 8ud1:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7038 8ueo:1O (3.8) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7039 8uep:1O (3.4) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7040 8ueq:1O (3.4) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7041 8uer:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7042 8ues:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7043 8uet:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7044 8ueu:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7045 8uev:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7046 8uew:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7047 8uex:1O (3.9) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7048 8uey:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7049 8uez:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7050 8ugh:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7051 8ugi:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7052 8ugj:1O (2.3) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7053 8ugn:1O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7054 8ugn:5O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7055 8ugr:1O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7056 8ugr:5O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    7057 8unl:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    7058 8unm:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7059 8unn:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7060 8uno:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    7061 8unp:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    7062 8unq:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    7063 8unr:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7064 8uns:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7065 8unt:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7066 8unu:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    7067 8unv:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    7068 8unw:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    7069 8unx:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    7070 8uny:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    7071 8unz:A (3.8) BS01 GTP ? GO:0002862 ... P63092 38480881
    7072 8uo0:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    7073 8uo1:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    7074 8uo2:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    7075 8uo3:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    7076 8uo4:A (4.0) BS01 GTP ? GO:0002862 ... P63092 38480881
    7077 8utn:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7078 8utn:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7079 8utn:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7080 8uto:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7081 8uto:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7082 8uto:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7083 8utp:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7084 8utp:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7085 8utp:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7086 8utq:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7087 8utq:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7088 8utr:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7089 8uts:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7090 8utt:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7091 8utt:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7092 8utt:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7093 8utu:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7094 8utu:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7095 8utv:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7096 8utv:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7097 8utw:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7098 8uty:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7099 8uty:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7100 8uty:S (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    7101 8v2i:A () BS01 GTP N/A N/A N/A N/A
    7102 8v2i:I () BS01 GTP N/A N/A N/A N/A
    7103 8v4k:A (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7104 8v4k:C (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7105 8v4l:A (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7106 8v4l:C (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7107 8v4m:A (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7108 8v4m:C (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    7109 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    7110 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    7111 8vhr:A (3.55) BS02 GTP N/A N/A P00452 39164005
    7112 8vhr:B (3.55) BS03 GTP N/A N/A P00452 39164005
    7113 8vhr:C (3.55) BS02 GTP N/A N/A P00452 39164005
    7114 8vhr:D (3.55) BS03 GTP N/A N/A P00452 39164005
    7115 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7116 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7117 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7118 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7119 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7120 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7121 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    7122 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    7123 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    7124 8w7a:B (3.77) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    7125 8w7j:A (3.98) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    7126 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 38816438
    7127 8wd0:A (2.6) BS01 GTP N/A GO:0000226 ... P81947 38905886
    7128 8wd0:C (2.6) BS01 GTP N/A GO:0000226 ... P81947 38905886
    7129 8wd0:D (2.6) BS01 GTP N/A GO:0005525 ... A0A287AGU7 38905886
    7130 8wej:E (2.79) BS02 GTP 3.6.5.2 GO:0001764 ... P63000 38355798
    7131 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    7132 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 N/A
    7133 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    7134 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7135 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7136 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7137 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7138 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7139 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    7140 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    7141 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    7142 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    7143 9bht:A (3.26) BS02 GTP N/A N/A N/A 38960133
    7144 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    7145 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    7146 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    7147 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    7148 9f1b:B (3.01) BS03 GTP N/A N/A G1SZF4 39169182
    7149 9f1c:B (3.78) BS03 GTP N/A N/A G1SZF4 39169182
    7150 9f1d:B (3.26) BS03 GTP N/A N/A G1SZF4 39169182
    7151 9f37:B (1.905) BS04 GTP N/A N/A H6QM91 N/A
    7152 9f8g:A (2.2) BS01 GTP N/A N/A P81947 39118608
    7153 9f8g:B (2.2) BS01 GTP N/A N/A Q6B856 39118608
    7154 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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