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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7154 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 8i7r:EH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5402 8i7r:EH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5403 8i7r:EI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5404 8i7r:EJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5405 8i7r:EJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5406 8i7r:EK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5407 8i7r:EL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5408 8i7r:FA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5409 8i7r:FB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5410 8i7r:FB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5411 8i7r:FC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5412 8i7r:FD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5413 8i7r:FE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5414 8i7r:FF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5415 8i7r:FF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5416 8i7r:FG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5417 8i7r:FH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5418 8i7r:FH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5419 8i7r:FI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5420 8i7r:FJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5421 8i7r:FJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5422 8i7r:FK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5423 8i7r:FL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5424 8i7r:GA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5425 8i7r:GB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5426 8i7r:GB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5427 8i7r:GC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5428 8i7r:GD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5429 8i7r:GD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5430 8i7r:GE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5431 8i7r:GF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5432 8i7r:GF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5433 8i7r:GG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5434 8i7r:GH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5435 8i7r:GH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5436 8i7r:GI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5437 8i7r:GJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5438 8i7r:GJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5439 8i7r:GK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5440 8i7r:GL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5441 8i7r:HA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5442 8i7r:HB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5443 8i7r:HB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5444 8i7r:HC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5445 8i7r:HD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5446 8i7r:HD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5447 8i7r:HE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5448 8i7r:HF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5449 8i7r:HF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5450 8i7r:HG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5451 8i7r:HH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5452 8i7r:HH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5453 8i7r:HI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5454 8i7r:HJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5455 8i7r:HJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5456 8i7r:HK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5457 8i7r:HL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5458 8i7r:IA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5459 8i7r:IB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5460 8i7r:IB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5461 8i7r:IC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5462 8i7r:ID (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5463 8i7r:ID (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5464 8i7r:IE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5465 8i7r:IF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5466 8i7r:IF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5467 8i7r:IG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5468 8i7r:IH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5469 8i7r:IH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5470 8i7r:II (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5471 8i7r:IJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5472 8i7r:IJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5473 8i7r:IK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5474 8i7r:IL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5475 8i7r:IL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5476 8i7r:IM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5477 8i7r:JA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5478 8i7r:JB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5479 8i7r:JB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5480 8i7r:JC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5481 8i7r:JD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5482 8i7r:JD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5483 8i7r:JE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5484 8i7r:JF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5485 8i7r:JF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5486 8i7r:JG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5487 8i7r:JH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5488 8i7r:JH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5489 8i7r:JI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5490 8i7r:JJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5491 8i7r:JJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5492 8i7r:JK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5493 8i7r:JL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5494 8i7r:KA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5495 8i7r:KB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5496 8i7r:KB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5497 8i7r:KC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5498 8i7r:KD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5499 8i7r:KD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5500 8i7r:KE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5501 8i7r:KF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5502 8i7r:KF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5503 8i7r:KG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5504 8i7r:KH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5505 8i7r:KH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5506 8i7r:KI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5507 8i7r:KJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5508 8i7r:KJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5509 8i7r:KK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5510 8i7r:KL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5511 8i7r:LA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5512 8i7r:LB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5513 8i7r:LB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5514 8i7r:LC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5515 8i7r:LD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5516 8i7r:LD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5517 8i7r:LE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5518 8i7r:LF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5519 8i7r:LF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5520 8i7r:LG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5521 8i7r:LH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5522 8i7r:LH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5523 8i7r:LI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5524 8i7r:LJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5525 8i7r:LJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5526 8i7r:LK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5527 8i7r:LL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5528 8i7r:MB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5529 8i7r:MB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5530 8i7r:MC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5531 8i7r:MD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5532 8i7r:MD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5533 8i7r:ME (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5534 8i7r:MF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5535 8i7r:MF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5536 8i7r:MG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5537 8i7r:MH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5538 8i7r:MH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5539 8i7r:MI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5540 8i7r:MJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5541 8i7r:MJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5542 8i7r:MK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5543 8i7r:ML (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5544 8i7r:ML (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5545 8i7r:MM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5546 8i7r:NA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5547 8i7r:NB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5548 8i7r:NB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5549 8i7r:NC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5550 8i7r:ND (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5551 8i7r:ND (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5552 8i7r:NE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5553 8i7r:NF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5554 8i7r:NF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5555 8i7r:NG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5556 8i7r:NH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5557 8i7r:NH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5558 8i7r:NI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5559 8i7r:NJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5560 8i7r:NJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5561 8i7r:NK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5562 8i7r:NL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5563 8i7r:OA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5564 8i7r:OB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5565 8i7r:OB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5566 8i7r:OC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5567 8i7r:OD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5568 8i7r:OD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5569 8i7r:OE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5570 8i7r:OF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5571 8i7r:OF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5572 8i7r:OG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5573 8i7r:OH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5574 8i7r:OH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5575 8i7r:OI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5576 8i7r:OJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5577 8i7r:OJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5578 8i7r:OK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5579 8i7r:OL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5580 8i7r:PA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5581 8i7r:PB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5582 8i7r:PB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5583 8i7r:PC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5584 8i7r:PD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5585 8i7r:PD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5586 8i7r:PE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5587 8i7r:PF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5588 8i7r:PF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5589 8i7r:PG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5590 8i7r:PH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5591 8i7r:PH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5592 8i7r:PI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5593 8i7r:PJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5594 8i7r:PJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5595 8i7r:PK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5596 8i7r:PL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5597 8i7r:PL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5598 8i7r:PM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5599 8i7r:QB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5600 8i7r:QB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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