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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7154 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 8i7o:HF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5202 8i7o:HF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5203 8i7o:HG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5204 8i7o:HH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5205 8i7o:HH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5206 8i7o:HI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5207 8i7o:IE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5208 8i7o:IF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5209 8i7o:IF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5210 8i7o:IG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5211 8i7o:IH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5212 8i7o:IH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5213 8i7o:II (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5214 8i7o:JD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5215 8i7o:JD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5216 8i7o:JE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5217 8i7o:JF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5218 8i7o:JF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5219 8i7o:JG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5220 8i7o:JH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5221 8i7o:KD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5222 8i7o:KD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5223 8i7o:KE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5224 8i7o:KF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5225 8i7o:KF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5226 8i7o:KG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5227 8i7o:KH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5228 8i7o:KI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5229 8i7o:LD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5230 8i7o:LD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5231 8i7o:LE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5232 8i7o:LF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5233 8i7o:LF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5234 8i7o:LG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5235 8i7o:LH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5236 8i7o:LH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5237 8i7o:LI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5238 8i7o:ME (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5239 8i7o:MF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5240 8i7o:MF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5241 8i7o:MG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5242 8i7o:MH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5243 8i7o:MH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5244 8i7o:MI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5245 8i7o:ND (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5246 8i7o:ND (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5247 8i7o:NE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5248 8i7o:NF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5249 8i7o:NF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5250 8i7o:NG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5251 8i7o:NH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5252 8i7o:NI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5253 8i7o:OD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5254 8i7o:OD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5255 8i7o:OE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5256 8i7o:OF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5257 8i7o:OF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5258 8i7o:OG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5259 8i7o:OH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5260 8i7o:OH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5261 8i7o:OI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5262 8i7o:PE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5263 8i7o:PF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5264 8i7o:PF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5265 8i7o:PG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5266 8i7o:PH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5267 8i7o:PH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5268 8i7o:PI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5269 8i7o:QE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5270 8i7o:QF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5271 8i7o:QF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5272 8i7o:QG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5273 8i7o:QH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5274 8i7o:QH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5275 8i7o:QI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5276 8i7o:RE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5277 8i7o:RF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5278 8i7o:RF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5279 8i7o:RG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5280 8i7o:RH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5281 8i7o:RH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5282 8i7o:RI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5283 8i7o:RJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5284 8i7o:SE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5285 8i7o:SF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5286 8i7o:SF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5287 8i7o:SG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5288 8i7o:SH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5289 8i7o:SH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5290 8i7o:SI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5291 8i7o:SJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5292 8i7o:TF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5293 8i7o:TF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5294 8i7o:TG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5295 8i7o:TH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5296 8i7o:TH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5297 8i7o:TI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5298 8i7o:TJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5299 8i7o:UD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5300 8i7o:UD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5301 8i7o:UE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5302 8i7o:UF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5303 8i7o:UF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5304 8i7o:UG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5305 8i7o:UH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5306 8i7o:VD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5307 8i7o:VD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5308 8i7o:VE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5309 8i7o:VF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5310 8i7o:VF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5311 8i7o:VG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5312 8i7o:VH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5313 8i7o:WE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5314 8i7o:WF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5315 8i7o:WF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5316 8i7o:WG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5317 8i7o:WH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5318 8i7o:WH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5319 8i7o:WI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5320 8i7r:AB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5321 8i7r:AB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5322 8i7r:AC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5323 8i7r:AD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5324 8i7r:AD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5325 8i7r:AE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5326 8i7r:AF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5327 8i7r:AF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5328 8i7r:AG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5329 8i7r:AH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5330 8i7r:AH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5331 8i7r:AI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5332 8i7r:AJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5333 8i7r:AJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5334 8i7r:AK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5335 8i7r:AL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5336 8i7r:AL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5337 8i7r:AM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5338 8i7r:BB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5339 8i7r:BB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5340 8i7r:BC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5341 8i7r:BD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5342 8i7r:BD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5343 8i7r:BE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5344 8i7r:BF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5345 8i7r:BF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5346 8i7r:BG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5347 8i7r:BH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5348 8i7r:BH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5349 8i7r:BI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5350 8i7r:BJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5351 8i7r:BJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5352 8i7r:BK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5353 8i7r:BL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5354 8i7r:BL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5355 8i7r:BM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5356 8i7r:CB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5357 8i7r:CB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5358 8i7r:CC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5359 8i7r:CD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5360 8i7r:CD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5361 8i7r:CE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5362 8i7r:CF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5363 8i7r:CF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5364 8i7r:CG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5365 8i7r:CH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5366 8i7r:CH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5367 8i7r:CI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5368 8i7r:CJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5369 8i7r:CJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5370 8i7r:CK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5371 8i7r:CL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5372 8i7r:CL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5373 8i7r:CM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5374 8i7r:DA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5375 8i7r:DB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5376 8i7r:DB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5377 8i7r:DC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5378 8i7r:DD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5379 8i7r:DD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5380 8i7r:DE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5381 8i7r:DF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5382 8i7r:DF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5383 8i7r:DG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5384 8i7r:DH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5385 8i7r:DH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5386 8i7r:DI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5387 8i7r:DJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5388 8i7r:DJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5389 8i7r:DK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5390 8i7r:DL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5391 8i7r:EA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5392 8i7r:EB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5393 8i7r:EB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5394 8i7r:EC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5395 8i7r:ED (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5396 8i7r:ED (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5397 8i7r:EE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    5398 8i7r:EF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5399 8i7r:EF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    5400 8i7r:EG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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