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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 904 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 3x3z:A (1.51) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    402 3x3z:B (1.51) BS01 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    403 3x3z:B (1.51) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    404 3x3z:B (1.51) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    405 3x3z:B (1.51) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    406 3x3z:B (1.51) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    407 3x3z:B (1.51) BS07 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    408 3x40:A (1.85) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    409 3x40:A (1.85) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    410 3x42:A (1.875) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    411 3x42:A (1.875) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    412 3x42:A (1.875) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    413 3x42:A (1.875) BS05 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    414 3x42:A (1.875) BS06 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    415 3x42:B (1.875) BS02 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    416 3x42:B (1.875) BS03 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    417 3x42:B (1.875) BS04 GOL 1.4.3.21 GO:0005507 ... P46881 26269595
    418 3zr4:E (2.41) BS01 GOL 4.3.2.10 GO:0000105 ... Q9X0C6 23261602
    419 3zsk:A (0.9) BS01 GOL ? GO:0030246 ... P17931 22111949
    420 3zsk:A (0.9) BS02 GOL ? GO:0030246 ... P17931 22111949
    421 4aio:A (1.9) BS01 GOL 3.2.1.41 GO:0004553 ... O48541 22949184
    422 4aio:A (1.9) BS02 GOL 3.2.1.41 GO:0004553 ... O48541 22949184
    423 4aq4:A (1.8) BS02 GOL ? GO:0001407 ... P0AG80 23013274
    424 4aq4:A (1.8) BS03 GOL ? GO:0001407 ... P0AG80 23013274
    425 4bnd:B (1.5) BS01 GOL 5.4.2.8 GO:0004615 ... A2RIP9 24100319
    426 4bnd:B (1.5) BS02 GOL 5.4.2.8 GO:0004615 ... A2RIP9 24100319
    427 4cte:A (1.8) BS05 GOL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    428 4cte:B (1.8) BS06 GOL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    429 4d4z:A (1.7) BS03 GOL 1.14.99.29 GO:0004497 ... Q9BU89 25865244
    430 4d4z:B (1.7) BS03 GOL 1.14.99.29 GO:0004497 ... Q9BU89 25865244
    431 4dd0:A (1.7) BS01 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    432 4dd0:A (1.7) BS02 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    433 4dd0:A (1.7) BS03 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    434 4dd0:A (1.7) BS04 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    435 4dd0:A (1.7) BS05 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    436 4dd0:A (1.7) BS06 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    437 4dd0:A (1.7) BS07 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    438 4dd0:A (1.7) BS08 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    439 4dd2:A (1.55) BS01 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    440 4dd2:A (1.55) BS02 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    441 4dd2:A (1.55) BS03 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    442 4dd2:A (1.55) BS04 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    443 4dd2:A (1.55) BS05 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    444 4dd2:A (1.55) BS06 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    445 4dd2:A (1.55) BS07 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    446 4dd7:A (1.6) BS03 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    447 4dd7:A (1.6) BS07 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    448 4dd7:A (1.6) BS08 GOL 3.2.1.17 GO:0003796 ... P00698 22525758
    449 4drs:A (2.5) BS03 GOL 2.7.1.40 GO:0000287 ... Q5CSM7 23056503
    450 4drs:A (2.5) BS04 GOL 2.7.1.40 GO:0000287 ... Q5CSM7 23056503
    451 4drs:B (2.5) BS03 GOL 2.7.1.40 GO:0000287 ... Q5CSM7 23056503
    452 4drs:B (2.5) BS04 GOL 2.7.1.40 GO:0000287 ... Q5CSM7 23056503
    453 4ewl:A (1.85) BS01 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    454 4ewl:A (1.85) BS04 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    455 4ewl:A (1.85) BS05 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    456 4ewl:A (1.85) BS06 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    457 4ewl:B (1.85) BS03 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    458 4ewl:B (1.85) BS04 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    459 4ewl:B (1.85) BS05 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    460 4ewl:B (1.85) BS06 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    461 4ewl:B (1.85) BS07 GOL 3.5.1.103 GO:0005886 ... P9WJN3 23090394
    462 4gw3:A (2.0) BS03 GOL 3.1.1.3 GO:0004806 ... B4EVM3 23300806
    463 4h5n:A (1.86) BS06 GOL 3.6.4.10 GO:0005524 ... P11142 25433210
    464 4h5n:A (1.86) BS07 GOL 3.6.4.10 GO:0005524 ... P11142 25433210
    465 4h5r:A (1.64) BS05 GOL 3.6.4.10 GO:0005524 ... P11142 25433210
    466 4h5r:B (1.64) BS03 GOL 3.6.4.10 GO:0005524 ... P11142 25433210
    467 4h5v:A (1.75) BS01 GOL 3.6.4.10 GO:0005524 ... P11142 25433210
    468 4ha3:A (1.46) BS01 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    469 4ha3:A (1.46) BS02 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    470 4ha3:A (1.46) BS03 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    471 4ha3:A (1.46) BS04 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    472 4ha4:A (1.37) BS01 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    473 4ha4:A (1.37) BS02 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    474 4ha4:A (1.37) BS03 GOL 3.2.1.23 GO:0004553 ... D9PZ08 23657657
    475 4jdy:A (1.8) BS01 GOL 4.3.3.6 GO:0042819 ... P9WII9 23643787
    476 4jdy:B (1.8) BS01 GOL 4.3.3.6 GO:0042819 ... P9WII9 23643787
    477 4jdy:C (1.8) BS01 GOL 4.3.3.6 GO:0042819 ... P9WII9 23643787
    478 4owj:A (2.0) BS01 GOL ? N/A P19247 24862282
    479 4owj:A (2.0) BS02 GOL ? N/A P19247 24862282
    480 4owj:B (2.0) BS01 GOL ? N/A P19247 24862282
    481 4owj:B (2.0) BS02 GOL ? N/A P19247 24862282
    482 4owj:C (2.0) BS01 GOL ? N/A P19247 24862282
    483 4owj:C (2.0) BS02 GOL ? N/A P19247 24862282
    484 4owj:D (2.0) BS01 GOL ? N/A P19247 24862282
    485 4owj:D (2.0) BS02 GOL ? N/A P19247 24862282
    486 4owj:E (2.0) BS01 GOL ? N/A P19247 24862282
    487 4owj:E (2.0) BS02 GOL ? N/A P19247 24862282
    488 4owj:F (2.0) BS01 GOL ? N/A P19247 24862282
    489 4owj:F (2.0) BS02 GOL ? N/A P19247 24862282
    490 4owj:G (2.0) BS01 GOL ? N/A P19247 24862282
    491 4owj:G (2.0) BS02 GOL ? N/A P19247 24862282
    492 4owk:A (2.0) BS02 GOL ? N/A P19247 24862282
    493 4owk:C (2.0) BS02 GOL ? N/A P19247 24862282
    494 4owk:D (2.0) BS02 GOL ? N/A P19247 24862282
    495 4owk:E (2.0) BS02 GOL ? N/A P19247 24862282
    496 4owk:F (2.0) BS02 GOL ? N/A P19247 24862282
    497 4owk:G (2.0) BS02 GOL ? N/A P19247 24862282
    498 4owl:A (2.1) BS01 GOL ? N/A P19247 24862282
    499 4owl:C (2.1) BS02 GOL ? N/A P19247 24862282
    500 4owl:D (2.1) BS02 GOL ? N/A P19247 24862282
    501 4owl:E (2.1) BS02 GOL ? N/A P19247 24862282
    502 4owl:F (2.1) BS02 GOL ? N/A P19247 24862282
    503 4r2w:A (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    504 4r2w:C (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    505 4r2w:D (1.6) BS02 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    506 4r2w:D (1.6) BS03 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    507 4r2w:F (1.6) BS03 GOL 2.4.2.3 GO:0003824 ... Q8E9X9 25478848
    508 4rlz:A (1.19) BS01 GOL ? N/A Q6B7R3 26147716
    509 4rlz:B (1.19) BS01 GOL ? N/A Q6B7R3 26147716
    510 4uej:A (1.74) BS02 GOL 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    511 4uej:B (1.74) BS02 GOL 1.1.1.251 GO:0005829 ... P0A9S3 26143925
    512 4v35:A (2.3) BS01 GOL 2.3.2.3 N/A Q9I537 26261323
    513 4v35:A (2.3) BS02 GOL 2.3.2.3 N/A Q9I537 26261323
    514 4wbd:A (1.77) BS02 GOL 6.-.-.- GO:0016874 ... P55342 25496067
    515 4wxs:A (1.9) BS02 GOL ? N/A Q99972 25524706
    516 4wxs:A (1.9) BS03 GOL ? N/A Q99972 25524706
    517 4wxs:A (1.9) BS04 GOL ? N/A Q99972 25524706
    518 4wxu:A (2.092) BS02 GOL ? N/A Q99972 25524706
    519 4wxu:A (2.092) BS03 GOL ? N/A Q99972 25524706
    520 4xbg:A (2.73) BS03 GOL N/A N/A N/A 26777395
    521 4xbp:F (2.94) BS01 GOL N/A N/A N/A 26777395
    522 4xcc:H (2.81) BS01 GOL N/A N/A N/A 26777395
    523 4xcc:L (2.81) BS01 GOL N/A N/A N/A 26777395
    524 4y13:A (3.096) BS02 GOL ? GO:0003677 ... Q8XBD0 25827420
    525 4y13:A (3.096) BS03 GOL ? GO:0003677 ... Q8XBD0 25827420
    526 4y42:B (2.09) BS01 GOL 4.2.1.104 GO:0003677 ... A8GBZ7 25849512
    527 4y42:H (2.09) BS01 GOL 4.2.1.104 GO:0003677 ... A8GBZ7 25849512
    528 4y42:I (2.09) BS01 GOL 4.2.1.104 GO:0003677 ... A8GBZ7 25849512
    529 4y42:J (2.09) BS01 GOL 4.2.1.104 GO:0003677 ... A8GBZ7 25849512
    530 4yr9:A (2.8) BS02 GOL 1.1.1.103 N/A Q8K3F7 26492815
    531 4yr9:B (2.8) BS02 GOL 1.1.1.103 N/A Q8K3F7 26492815
    532 4z6b:A (1.2) BS01 GOL 3.1.3.48 GO:0004725 ... P15273 26445170
    533 4zl8:A (1.395) BS01 GOL ? GO:0016491 ... P0C2B2 26627647
    534 4zn5:A (1.12) BS03 GOL 3.1.3.48 GO:0004725 ... P15273 26445170
    535 4zrd:A (2.3) BS01 GOL 3.1.1.- GO:0005576 ... A8PUY1 26365206
    536 5azi:A (2.45) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    537 5azi:B (2.45) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    538 5azi:C (2.45) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    539 5azi:D (2.45) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    540 5azj:A (2.61) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    541 5azj:B (2.61) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    542 5azj:C (2.61) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    543 5azj:D (2.61) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 28778484
    544 5csr:A (1.94) BS01 GOL 5.3.1.1 GO:0004807 ... Q9HLB6 26709515
    545 5csr:B (1.94) BS01 GOL 5.3.1.1 GO:0004807 ... Q9HLB6 26709515
    546 5csr:C (1.94) BS01 GOL 5.3.1.1 GO:0004807 ... Q9HLB6 26709515
    547 5csr:D (1.94) BS01 GOL 5.3.1.1 GO:0004807 ... Q9HLB6 26709515
    548 5duu:A (2.0) BS01 GOL ? GO:0030246 ... P56470 26828567
    549 5duu:B (2.0) BS01 GOL ? GO:0030246 ... P56470 26828567
    550 5duu:C (2.0) BS01 GOL ? GO:0030246 ... P56470 26828567
    551 5duu:D (2.0) BS01 GOL ? GO:0030246 ... P56470 26828567
    552 5dux:A (1.85) BS01 GOL ? GO:0030246 ... P56470 26828567
    553 5dux:C (1.85) BS01 GOL ? GO:0030246 ... P56470 26828567
    554 5e9g:A (2.1) BS02 GOL 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    555 5e9g:B (2.1) BS02 GOL 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    556 5e9g:D (2.1) BS02 GOL 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    557 5evo:A (2.51) BS02 GOL 1.8.5.1 GO:0004364 ... U5XYA0 27067046
    558 5gn5:A (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    559 5gn5:B (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    560 5gn5:C (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    561 5gn5:D (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    562 5gn6:A (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    563 5gn6:B (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    564 5gn6:C (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    565 5gn6:D (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    566 5gw8:B (2.0) BS01 GOL 3.1.1.- GO:0006629 ... A8PUY5 28433636
    567 5gzc:A (1.08) BS01 GOL ? GO:0030246 ... O00214 27973456
    568 5hc0:A (1.4) BS01 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    569 5hc0:A (1.4) BS02 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    570 5hc0:A (1.4) BS03 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    571 5hc0:A (1.4) BS04 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    572 5hc3:B (2.4) BS01 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    573 5hc3:B (2.4) BS02 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    574 5hc3:B (2.4) BS03 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    575 5hc3:D (2.4) BS01 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    576 5hc4:A (2.0) BS01 GOL 3.1.1.- GO:0016298 ... H6BDX1 27328716
    577 5ikz:A (2.8) BS02 GOL N/A GO:0043720 ... N/A 27226606
    578 5k9h:A (2.029) BS01 GOL ? GO:0004560 ... A0A1D5B391 27710940
    579 5k9h:A (2.029) BS02 GOL ? GO:0004560 ... A0A1D5B391 27710940
    580 5k9h:A (2.029) BS03 GOL ? GO:0004560 ... A0A1D5B391 27710940
    581 5k9h:A (2.029) BS04 GOL ? GO:0004560 ... A0A1D5B391 27710940
    582 5k9h:A (2.029) BS05 GOL ? GO:0004560 ... A0A1D5B391 27710940
    583 5lt5:A (1.45) BS01 GOL ? GO:0015977 ... Q31QW7 28369612
    584 5m5b:B (2.01) BS01 GOL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A024B7W1 28031359
    585 5olu:A (1.8) BS01 GOL N/A N/A N/A 29278448
    586 5olu:A (1.8) BS02 GOL N/A N/A N/A 29278448
    587 5t7u:A (1.58) BS01 GOL ? GO:0030246 ... O00214 28000747
    588 5vcc:A (1.7) BS02 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    589 5vcc:A (1.7) BS03 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    590 5vcc:A (1.7) BS04 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    591 5vcc:A (1.7) BS05 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    592 5vcc:A (1.7) BS06 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    593 5vcc:A (1.7) BS07 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    594 5vcc:A (1.7) BS08 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    595 5vcd:A (1.95) BS02 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    596 5vcd:A (1.95) BS03 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    597 5vcd:A (1.95) BS04 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    598 5vcd:A (1.95) BS05 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    599 5vcd:A (1.95) BS06 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    600 5vcd:A (1.95) BS07 GOL 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 28590129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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