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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1u4m:A (2.0) BS01 GNS ? GO:0002407 ... P13501 15530372
    2 2erm:A (-1.00) BS02 GNS ? GO:0001525 ... P05230 16995857
    3 2erm:A (-1.00) BS06 GNS ? GO:0001525 ... P05230 16995857
    4 3ud7:B (2.8) BS02 GNS ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.74, Kd=18.1uM
    5 4ndz:A (3.45) BS02 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    6 4ndz:A (3.45) BS04 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    7 4ndz:B (3.45) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    8 4ndz:B (3.45) BS05 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    9 4ndz:B (3.45) BS07 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    10 4ndz:C (3.45) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    11 4ndz:D (3.45) BS04 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    12 4ndz:D (3.45) BS06 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    13 4ndz:D (3.45) BS07 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    14 4ndz:E (3.45) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    15 4ndz:E (3.45) BS04 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    16 4ndz:F (3.45) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9
    Q76KB1    		 N/A
    17 5e98:A (1.63) BS02 GNS 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    18 5e98:B (1.63) BS02 GNS 3.2.1.166 N/A Q9Y251 26575439
    19 5t03:A (2.1) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    20 5t03:A (2.1) BS03 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    21 5t03:B (2.1) BS02 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    22 5t05:A (1.952) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    23 5t05:A (1.952) BS03 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    24 5t05:B (1.952) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    25 5t05:B (1.952) BS03 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    26 5t0a:A (1.95) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    27 5t0a:A (1.95) BS03 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    28 5t0a:B (1.95) BS01 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    29 5t0a:B (1.95) BS03 GNS 2.8.2.- GO:0005515 ... P0AEX9 28103688
    30 6i01:A (2.1) BS02 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    31 6i01:A (2.1) BS04 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    32 6i01:B (2.1) BS01 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    33 6i01:B (2.1) BS03 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    34 6i02:A (2.45) BS02 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    35 6i02:A (2.45) BS04 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    36 6i02:B (2.45) BS01 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    37 6i02:B (2.45) BS03 GNS 5.1.3.17 GO:0015012 ... O94923 30872481
    38 6xl8:A (2.34) BS01 GNS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    39 6xl8:A (2.34) BS03 GNS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    40 6xl8:B (2.34) BS01 GNS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    41 6xl8:B (2.34) BS03 GNS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    42 8viw:A (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    43 8viw:A (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    44 8viw:B (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    45 8viw:B (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    46 8viw:C (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    47 8viw:C (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    48 8viw:D (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    49 8viw:D (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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