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BioLiP
Download all results in tab-seperated text for 1213 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 8tbl:B (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    1202 8tbm:A (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    1203 8tbm:B (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    1204 8tbn:A (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    1205 8tbn:B (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    1206 9ax6:A (1.65) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38593348
    1207 9ax6:B (1.65) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38593348
    1208 9bfy:A (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    1209 9bfy:B (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    1210 9bg1:A (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    1211 9bg1:B (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    1212 9em9:A (3.76) BS01 GNP N/A N/A P73765 39207903
    1213 9em9:B (3.76) BS01 GNP N/A N/A P73765 39207903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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