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BioLiP
Download all results in tab-seperated text for 1213 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5oct:E (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    602 5oct:F (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    603 5p21:A (1.35) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 2196171
    604 5szh:B (2.3) BS01 GNP 3.6.5.2 GO:0000045 ... Q9H0U4 27552051
    605 5szi:A (2.85) BS01 GNP 3.6.5.2 GO:0000139 ... P61006 27552051
    606 5szj:A (2.66) BS01 GNP 3.6.5.2 GO:0000139 ... P61026 27552051
    607 5szk:B (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... Q9H0U4 27552051
    608 5t62:W (3.3) BS02 GNP 3.6.1.- GO:0000027 ... P53145 28179369
    609 5ufe:A (2.302) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 28724936
    610 5ufq:A (2.199) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 28724936
    611 5ufq:B (2.199) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 28724936
    612 5uhv:A (1.672) BS01 GNP 3.6.5.2 GO:0003924 ... P01111 28630043
    613 5upk:C (2.4) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 29295922
    614 5usj:A (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    615 5usj:B (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    616 5usj:C (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    617 5usj:D (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    618 5usj:E (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    619 5usj:F (1.94) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 28235199
    620 5uwh:A (2.26) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    621 5uwi:A (2.143) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    622 5uwj:A (2.221) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    623 5uwo:A (2.347) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    624 5uwp:A (2.054) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    625 5uwq:A (2.278) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    626 5uwr:A (2.24) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    627 5uws:A (2.401) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    628 5uwt:A (2.342) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    629 5uwu:A (2.24) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    630 5uww:A (2.152) BS01 GNP 3.6.5.- GO:0000054 ... P62826 28282025
    631 5vbz:A (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    632 5vbz:B (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    633 5vbz:C (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29033317
    634 5wdo:A (1.65) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 28686159
    635 5wdp:A (1.35) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 28686159
    636 5wdq:A (1.25) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 28686159
    637 5wdr:A (1.6) BS02 GNP 3.6.5.2 GO:0003924 ... F2UBE5 28686159
    638 5wdr:B (1.6) BS02 GNP 3.6.5.2 GO:0003924 ... F2UBE5 28686159
    639 5wdt:z (3.0) BS05 GNP ? GO:0003723 ... P0CE48 29733411
    640 5we4:z (3.1) BS05 GNP ? GO:0003723 ... P0CE48 29733411
    641 5wfo:Q (1.99) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    642 5wfp:Q (2.08) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    643 5wfq:Q (2.26) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    644 5wfr:Q (2.46) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 29444450
    645 5whe:A (1.91) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    646 5whe:D (1.91) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    647 5whe:G (1.91) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    648 5whe:J (1.91) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    649 5wlb:A (1.72) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    650 5wlb:D (1.72) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    651 5wpl:A (2.15) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 29282294
    652 5wpl:D (2.15) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 29282294
    653 5wpl:G (2.15) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 29282294
    654 5wpl:J (2.15) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 29282294
    655 5wpm:A (1.72) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29282294
    656 5x9s:A (2.5) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 28730604
    657 5xkt:A (1.8) BS01 GNP N/A GO:0003924 ... N/A 29203664
    658 5xkt:A (1.8) BS04 GNP N/A GO:0003924 ... N/A 29203664
    659 5xkt:B (1.8) BS01 GNP N/A GO:0003924 ... N/A 29203664
    660 5xkt:B (1.8) BS03 GNP N/A GO:0003924 ... N/A 29203664
    661 5xr6:A (2.6) BS01 GNP ? GO:0003924 ... P28185 N/A
    662 5xr6:B (2.6) BS01 GNP ? GO:0003924 ... P28185 N/A
    663 5zc6:A (-1.00) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30141910
    664 621p:A (2.4) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 2199064
    665 6amb:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29062045
    666 6bvi:A (1.746) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29856609
    667 6bvj:A (1.747) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29856609
    668 6bvk:A (1.799) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29856609
    669 6bvl:A (1.748) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29856609
    670 6bvm:A (1.796) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 29856609
    671 6c5u:A (2.41) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    672 6c5u:B (2.41) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    673 6c5u:C (2.41) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    674 6c5u:D (2.41) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    675 6cav:A (2.6) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    676 6cav:B (2.6) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    677 6cav:C (2.6) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    678 6cav:D (2.6) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    679 6cc9:B (-1.00) BS03 GNP 3.6.5.2 GO:0000139 ... P01116 30122370
    680 6cch:B (-1.00) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 30122370
    681 6ccx:B (-1.00) BS03 GNP 3.6.5.2 GO:0000139 ... P01116 30122370
    682 6ces:A (4.0) BS01 GNP 3.6.5.- GO:0003924 ... Q7L523 29590090
    683 6cey:A (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    684 6cey:B (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    685 6cey:C (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    686 6cey:D (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    687 6cgd:A (2.2) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    688 6cgd:B (2.2) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    689 6cgd:C (2.2) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    690 6cgd:D (2.2) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    691 6cgg:A (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    692 6cgg:B (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    693 6cgg:C (2.4) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    694 6cgg:D (2.4) BS02 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    695 6ch4:A (2.3) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    696 6ch4:B (2.3) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    697 6ch4:C (2.3) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    698 6ch4:D (2.3) BS01 GNP 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 29661878
    699 6cit:A (2.027) BS01 GNP 3.6.5.- GO:0000054 ... P62826 29927350
    700 6cu6:A (1.5) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 31649109
    701 6cu6:B (1.5) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 31649109
    702 6cu6:C (1.5) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 31649109
    703 6cuo:A (1.73) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30258545
    704 6cup:A (1.833) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30258545
    705 6cur:A (1.73) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30258545
    706 6d55:A (1.68) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    707 6d56:A (1.68) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    708 6d59:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    709 6d5e:A (1.75) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    710 6d5g:A (1.92) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    711 6d5h:A (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    712 6d5j:A (1.751) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    713 6d5l:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    714 6d5m:Q (2.081) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    715 6d5v:Q (2.04) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    716 6d5w:Q (2.478) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    717 6e6c:A (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    718 6e6f:A (3.401) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31390567
    719 6e6f:B (3.401) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31390567
    720 6e6h:A (1.99) BS01 GNP 3.6.5.2 GO:0003924 ... P01111 31390567
    721 6e6p:A (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    722 6e6p:B (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    723 6e6p:C (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    724 6eze:A (2.47) BS01 GNP ? GO:0003723 ... P0CE48 30107565
    725 6eze:B (2.47) BS01 GNP ? GO:0003723 ... P0CE48 30107565
    726 6f76:A (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    727 6f76:B (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    728 6f76:C (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    729 6f76:D (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    730 6f76:E (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    731 6f76:F (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 29989546
    732 6fa1:A (1.97) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    733 6fa1:B (1.97) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    734 6fa1:C (1.97) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    735 6fa1:D (1.97) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    736 6fa1:E (1.97) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    737 6fa1:F (1.97) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    738 6fa2:A (2.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    739 6fa2:B (2.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    740 6fa2:C (2.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    741 6fa2:D (2.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    742 6fa2:E (2.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    743 6fa2:F (2.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    744 6fa3:A (1.82) BS03 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    745 6fa3:B (1.82) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    746 6fa3:C (1.82) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    747 6fa3:D (1.82) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    748 6fa3:E (1.82) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    749 6fa3:F (1.82) BS03 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    750 6fa4:A (2.02) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    751 6fa4:B (2.02) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    752 6fa4:C (2.02) BS03 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    753 6fa4:D (2.02) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    754 6fa4:E (2.02) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    755 6fa4:F (2.02) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    756 6frk:x (3.7) BS03 GNP 3.6.5.4 GO:0003723 ... P61010 29567807
    757 6frk:y (3.7) BS02 GNP ? GO:0003924 ... G1TCX6 29567807
    758 6frk:y (3.7) BS03 GNP ? GO:0003924 ... G1TCX6 29567807
    759 6g12:A (1.929) BS01 GNP ? GO:0003924 ... A0A0H2XK72 30366986
    760 6g12:B (1.929) BS01 GNP ? GO:0003924 ... A0A0H2XK72 30366986
    761 6gni:B (4.9) BS01 GNP 3.6.5.- GO:0003924 ... P20606 30297805
    762 6god:A (1.71) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 30683716
    763 6goe:A (1.6) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    764 6gof:A (1.98) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 30683716
    765 6gog:A (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    766 6gog:B (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    767 6gog:C (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    768 6gog:D (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    769 6gog:E (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    770 6gog:F (2.05) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    771 6gom:A (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    772 6gom:B (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    773 6gom:C (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    774 6gom:D (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    775 6gom:E (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    776 6gom:F (1.63) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    777 6gqt:A (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    778 6gqt:B (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    779 6gqt:C (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    780 6gqt:D (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    781 6gqt:E (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    782 6gqt:F (1.69) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    783 6gqw:A (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    784 6gqw:B (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    785 6gqw:C (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    786 6gqw:D (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    787 6gqw:E (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    788 6gqw:F (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    789 6gqx:A (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    790 6gqx:B (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    791 6gqx:C (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    792 6gqx:D (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    793 6gqx:E (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    794 6gqx:F (2.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    795 6gqy:A (2.75) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    796 6gqy:B (2.75) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    797 6gqy:C (2.75) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    798 6gqy:D (2.75) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    799 6gqy:E (2.75) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    800 6gqy:F (2.75) BS03 GNP 3.6.5.2 GO:0003924 ... P01116 30683716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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