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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2a8g:B (1.99) BS01 GNG ? GO:0005576 ... P02701 16413579 MOAD: Kd=205uM
    PDBbind: -logKd/Ki=3.69, Kd=205uM
    2 2zi7:A (1.97) BS01 GNG 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18570408
    3 2zi7:B (1.97) BS01 GNG 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18570408
    4 3iom:A (2.14) BS02 GNG 2.4.2.1 GO:0003824 ... P9WP01 20570524
    5 3iom:B (2.14) BS02 GNG 2.4.2.1 GO:0003824 ... P9WP01 20570524
    6 4da0:A (2.95) BS01 GNG 2.4.2.1 GO:0003824 ... O34925 22957058
    7 4lcn:A (1.8) BS02 GNG 3.5.-.- GO:0003824 ... Q82Y41 24083949 MOAD: Ka=91000M^-1
    8 5fbg:B (1.97) BS05 GNG 3.1.30.1 GO:0003676 ... P24021 28036383
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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