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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fi1:A (2.9) BS01 GMH ? GO:0009279 ... P06971 11587645
    2 2rib:A (1.8) BS04 GMH ? N/A P35247 18092821 PDBbind: -logKd/Ki=2.82, IC50=1.5mM
    3 2rib:B (1.8) BS04 GMH ? N/A P35247 18092821
    4 2rib:C (1.8) BS04 GMH ? N/A P35247 18092821
    5 2ric:A (1.8) BS04 GMH ? N/A P35247 18092821
    6 2ric:B (1.8) BS01 GMH ? N/A P35247 18092821
    7 2ric:C (1.8) BS01 GMH ? N/A P35247 18092821
    8 3v0w:H (1.73) BS04 GMH N/A N/A N/A 23184990
    9 4c83:A (2.69) BS01 GMH N/A N/A N/A 24488440
    10 4c83:C (2.69) BS01 GMH N/A N/A N/A 24488440
    11 4e52:B (1.7) BS01 GMH ? N/A P35247 26953329
    12 4e52:C (1.7) BS01 GMH ? N/A P35247 26953329
    13 5oxr:B (1.75) BS02 GMH ? N/A P35247 29912941
    14 5oxr:C (1.75) BS02 GMH ? N/A P35247 29912941
    15 5oxs:B (1.65) BS02 GMH ? N/A P35247 29912941
    16 5oxs:C (1.65) BS02 GMH ? N/A P35247 29912941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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