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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 364 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7ov2:A (2.1) BS05 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    202 7ov2:A (2.1) BS06 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    203 7ov2:A (2.1) BS07 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    204 7ov2:A (2.1) BS08 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    205 7ov2:A (2.1) BS09 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    206 7ov2:A (2.1) BS10 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    207 7ov2:A (2.1) BS11 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    208 7ov2:A (2.1) BS12 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    209 7ov2:A (2.1) BS13 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    210 7ov2:A (2.1) BS15 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    211 7ov2:A (2.1) BS18 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    212 7ov2:A (2.1) BS19 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    213 7ov2:A (2.1) BS20 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    214 7ov2:A (2.1) BS21 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    215 7ov2:A (2.1) BS22 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    216 7ov2:A (2.1) BS23 GLN 3.1.3.2 GO:0003993 ... P09889 34331400
    217 7sbm:A (2.8) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    218 7sbm:B (2.8) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    219 7sbm:C (2.8) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    220 7sbm:D (2.8) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    221 7sbn:A (2.14) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    222 7sbn:B (2.14) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    223 7sbn:C (2.14) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    224 7sbn:D (2.14) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 34999118
    225 7tf6:A (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    226 7tf6:B (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    227 7tf6:C (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    228 7tf6:F (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    229 7tf6:G (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    230 7tf6:H (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    231 7tf6:L (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    232 7tf6:N (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    233 7tf6:O (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    234 7tf6:R (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    235 7tf6:S (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    236 7tf6:T (2.15) BS06 GLN 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    237 7tf9:A (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    238 7tf9:B (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    239 7tf9:C (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    240 7tf9:F (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    241 7tf9:G (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    242 7tf9:H (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    243 7tf9:I (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    244 7tf9:N (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    245 7tf9:O (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    246 7tf9:P (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    247 7tf9:Q (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    248 7tf9:R (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    249 7tf9:S (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    250 7tf9:T (2.61) BS04 GLN 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    251 7tfa:B (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    252 7tfa:E (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    253 7tfa:F (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    254 7tfa:J (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    255 7tfa:K (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    256 7tfa:L (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    257 7tfa:Q (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    258 7tfa:R (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    259 7tfa:S (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    260 7tfa:T (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    261 7tfa:W (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    262 7tfa:X (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    263 7tfb:B (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    264 7tfb:D (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    265 7tfb:F (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    266 7tfb:J (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    267 7tfb:K (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    268 7tfb:L (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    269 7tfb:N (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    270 7tfb:S (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    271 7tfb:T (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    272 7tfb:U (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    273 7tfb:V (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    274 7tfb:Y (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    275 7tfb:Z (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    276 7tfb:b (2.28) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    277 7tfc:A (1.96) BS05 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    278 7tfc:B (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    279 7tfc:C (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    280 7tfc:F (1.96) BS05 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    281 7tfc:G (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    282 7tfc:H (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    283 7tfc:I (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    284 7tfc:N (1.96) BS05 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    285 7tfc:O (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    286 7tfc:P (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    287 7tfc:Q (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    288 7tfc:R (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    289 7tfc:S (1.96) BS05 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    290 7tfc:T (1.96) BS06 GLN 6.3.1.2 GO:0003824 ... A0A085CCI2 35778410
    291 7wiz:A (3.2) BS01 GLN 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    292 7wiz:B (3.2) BS03 GLN 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    293 7wiz:C (3.2) BS01 GLN 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    294 7wiz:D (3.2) BS03 GLN 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    295 8b5d:A (2.0) BS01 GLN ? GO:0015276 ... A0A2X0R690 39090964
    296 8b5d:B (2.0) BS01 GLN ? GO:0015276 ... A0A2X0R690 39090964
    297 8eyz:A (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    298 8eyz:B (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    299 8eyz:C (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    300 8eyz:D (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    301 8eyz:E (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    302 8eyz:F (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    303 8eyz:G (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    304 8eyz:H (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    305 8eyz:I (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    306 8eyz:J (2.99) BS01 GLN ? GO:0006865 ... P0AEQ3 36378237
    307 8eyz:K (2.99) BS02 GLN ? GO:0006865 ... P0AEQ3 36378237
    308 8eyz:L (2.99) BS03 GLN ? GO:0006865 ... P0AEQ3 36378237
    309 8hnj:A (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    310 8hnj:B (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    311 8hnj:C (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    312 8hnj:D (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    313 8hnj:E (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    314 8hnj:F (2.03) BS01 GLN ? GO:0006865 ... P0AEQ3 36958447
    315 8i92:B (3.2) BS01 GLN ? GO:0003333 ... Q695T7 37684251
    316 8i92:D (3.2) BS01 GLN ? GO:0003333 ... Q695T7 37684251
    317 8qro:A (2.6) BS01 GLN N/A N/A Q15758 39095408
    318 8qro:B (2.6) BS01 GLN N/A N/A Q15758 39095408
    319 8qro:C (2.6) BS01 GLN N/A N/A Q15758 39095408
    320 8qrp:B (2.7) BS01 GLN N/A N/A Q15758 39095408
    321 8qrq:B (2.74) BS01 GLN N/A N/A Q15758 39095408
    322 8qrr:B (2.78) BS01 GLN N/A N/A Q15758 39095408
    323 8qrs:B (2.86) BS01 GLN N/A N/A Q15758 39095408
    324 8qru:B (2.9) BS01 GLN N/A N/A Q15758 39095408
    325 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    326 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    327 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    328 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    329 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    330 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    331 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    332 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    333 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    334 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    335 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    336 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    337 8t0z:A (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    338 8t0z:B (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    339 8t0z:C (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    340 8t0z:D (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    341 8t0z:E (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    342 8t0z:F (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    343 8t0z:G (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    344 8t0z:H (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    345 8t0z:I (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    346 8t0z:J (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    347 8t0z:K (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    348 8t0z:L (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    349 8u7j:M (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    350 8u7j:N (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    351 8u7j:O (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    352 8u7j:P (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    353 8u7j:Q (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    354 8u7j:R (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    355 8u7j:S (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    356 8u7j:T (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    357 8u7j:U (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    358 8u7j:V (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    359 8u7j:W (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    360 8u7j:X (3.02) BS01 GLN N/A GO:0004359 ... A7WYT2 38782204
    361 9eni:A (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    362 9eni:B (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    363 9eni:C (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    364 9eni:D (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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