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BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 4yee:C (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3202 4yee:C (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3203 4yee:D (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3204 4yee:D (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3205 4yee:D (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3206 4yee:E (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3207 4yee:E (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3208 4yee:E (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3209 4yee:F (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3210 4yee:F (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3211 4yee:F (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3212 4yee:G (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3213 4yee:G (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3214 4yee:G (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3215 4yee:G (2.0) BS04 GLC ? N/A Q9QZH4 25774984
    3216 4yee:H (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3217 4yee:H (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3218 4yee:H (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3219 4yee:I (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3220 4yee:I (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3221 4yee:I (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3222 4yee:J (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3223 4yee:J (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3224 4yee:J (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3225 4yee:K (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3226 4yee:K (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3227 4yee:K (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3228 4yee:L (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3229 4yee:L (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3230 4yee:L (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3231 4yee:M (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3232 4yee:M (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3233 4yee:M (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3234 4yee:N (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3235 4yee:N (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3236 4yee:N (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3237 4yee:N (2.0) BS04 GLC ? N/A Q9QZH4 25774984
    3238 4yee:O (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3239 4yee:O (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3240 4yee:O (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3241 4yee:P (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3242 4yee:P (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3243 4yee:P (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3244 4yee:Q (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3245 4yee:Q (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3246 4yee:Q (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3247 4yee:R (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    3248 4yee:R (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    3249 4yee:R (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    3250 4yef:A (1.72) BS01 GLC ? N/A P80386 25774984
    3251 4yef:A (1.72) BS02 GLC ? N/A P80386 25774984
    3252 4yef:B (1.72) BS01 GLC ? N/A P80386 25774984
    3253 4yef:B (1.72) BS02 GLC ? N/A P80386 25774984
    3254 4yef:C (1.72) BS01 GLC ? N/A P80386 25774984
    3255 4yef:C (1.72) BS02 GLC ? N/A P80386 25774984
    3256 4yef:D (1.72) BS01 GLC ? N/A P80386 25774984
    3257 4yef:D (1.72) BS02 GLC ? N/A P80386 25774984
    3258 4yef:E (1.72) BS01 GLC ? N/A P80386 25774984
    3259 4yef:E (1.72) BS02 GLC ? N/A P80386 25774984
    3260 4yef:F (1.72) BS01 GLC ? N/A P80386 25774984
    3261 4yef:F (1.72) BS02 GLC ? N/A P80386 25774984
    3262 4yef:G (1.72) BS01 GLC ? N/A P80386 25774984
    3263 4yef:G (1.72) BS02 GLC ? N/A P80386 25774984
    3264 4yel:A (1.72) BS02 GLC ? N/A Q9AYY6 N/A
    3265 4yfu:A (1.5) BS03 GLC 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    3266 4yfu:D (1.5) BS03 GLC 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    3267 4ys9:B (2.0) BS01 GLC ?
    3.4.19.12    		 GO:0008643 ... P0AEY0
    P54252    		 27047745
    3268 4ys9:B (2.0) BS02 GLC ?
    3.4.19.12    		 GO:0008643 ... P0AEY0
    P54252    		 27047745
    3269 4zb0:A (2.0) BS04 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3270 4zb0:B (2.0) BS05 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3271 4zb2:A (2.0) BS03 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3272 4zb5:A (2.0) BS03 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3273 4zbc:A (2.0) BS04 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3274 4zbc:A (2.0) BS05 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3275 4zbc:B (2.0) BS04 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3276 4zbc:B (2.0) BS05 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    3277 4ze9:A (2.65) BS01 GLC ? GO:0015833 ... Q52012 26244338
    3278 4zeb:A (1.89) BS01 GLC ? GO:0015833 ... Q52012 26244338
    3279 4zeb:B (1.89) BS01 GLC ? GO:0015833 ... Q52012 26244338
    3280 4zno:A (1.86) BS01 GLC ? GO:0005537 ... Q5CZR5 26711430
    3281 4zno:B (1.86) BS01 GLC ? GO:0005537 ... Q5CZR5 26711430
    3282 4zo7:A (2.0) BS05 GLC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    3283 4zo7:B (2.0) BS01 GLC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    3284 4zo9:A (1.99) BS01 GLC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    3285 4zo9:A (1.99) BS03 GLC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    3286 4zo9:B (1.99) BS01 GLC 3.2.1.21 GO:0004553 ... Q92AS9 26886583
    3287 4zrv:A (2.095) BS01 GLC ? N/A E1BHM0 27542410
    3288 4zrv:C (2.095) BS01 GLC ? N/A E1BHM0 27542410
    3289 4zrv:C (2.095) BS02 GLC ? N/A E1BHM0 27542410
    3290 4zrw:A (2.6) BS01 GLC ? N/A E1BHM0 27542410
    3291 4zrw:A (2.6) BS02 GLC ? N/A E1BHM0 27542410
    3292 4zs9:A (1.37) BS02 GLC ? GO:0015768 ... A0A1A9TA69 27502277
    3293 4zs9:B (1.37) BS01 GLC ? GO:0015768 ... A0A1A9TA69 27502277
    3294 4zw9:A (1.502) BS01 GLC ? GO:0005353 ... P11169 26176916
    3295 4zwb:A (2.4) BS01 GLC ? GO:0005353 ... P11169 26176916
    3296 4zwb:A (2.4) BS02 GLC ? GO:0005353 ... P11169 26176916
    3297 4zwc:A (2.6) BS01 GLC ? GO:0005353 ... P11169 26176916
    3298 4zwc:A (2.6) BS02 GLC ? GO:0005353 ... P11169 26176916
    3299 4zwc:B (2.6) BS01 GLC ? GO:0005353 ... P11169 26176916
    3300 4zwc:B (2.6) BS02 GLC ? GO:0005353 ... P11169 26176916
    3301 4zxw:A (2.187) BS01 GLC ? GO:0003824 ... Q8GMG2 N/A
    3302 4zxw:B (2.187) BS01 GLC ? GO:0003824 ... Q8GMG2 N/A
    3303 4zza:A (2.02) BS02 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3304 4zza:B (2.02) BS01 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3305 4zze:A (1.76) BS01 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3306 4zze:A (1.76) BS02 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3307 4zze:B (1.76) BS01 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3308 4zze:B (1.76) BS02 GLC ? GO:0015768 ... A0A1A9TAB8 27502277
    3309 5a05:A (1.897) BS02 GLC 1.1.99.- GO:0000166 ... Q9A8X3 26438878
    3310 5a2b:A (1.85) BS01 GLC 3.2.1.1 GO:0004556 ... I1VWH9 26975884
    3311 5a2b:A (1.85) BS02 GLC 3.2.1.1 GO:0004556 ... I1VWH9 26975884
    3312 5a2c:A (1.9) BS01 GLC 3.2.1.1 GO:0004556 ... I1VWH9 26975884
    3313 5a2c:A (1.9) BS02 GLC 3.2.1.1 GO:0004556 ... I1VWH9 26975884
    3314 5awp:A (2.0) BS02 GLC ? GO:0004553 ... Q7WSN5 26330557
    3315 5awp:A (2.0) BS03 GLC ? GO:0004553 ... Q7WSN5 26330557
    3316 5awq:A (1.48) BS01 GLC ? GO:0004553 ... Q7WSN5 26330557
    3317 5awq:A (1.48) BS02 GLC ? GO:0004553 ... Q7WSN5 26330557
    3318 5awq:A (1.48) BS03 GLC ? GO:0004553 ... Q7WSN5 26330557
    3319 5awq:A (1.48) BS04 GLC ? GO:0004553 ... Q7WSN5 26330557
    3320 5axh:A (2.2) BS01 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3321 5axh:A (2.2) BS02 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3322 5axh:A (2.2) BS03 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3323 5axh:B (2.2) BS02 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3324 5axh:B (2.2) BS03 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3325 5axh:B (2.2) BS04 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3326 5axh:B (2.2) BS05 GLC 3.2.1.11 GO:0016020 ... B0KBZ7 26494689
    3327 5az6:A (2.56) BS01 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3328 5az6:A (2.56) BS02 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3329 5az6:B (2.56) BS01 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3330 5az6:B (2.56) BS02 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3331 5az7:A (1.96) BS01 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3332 5az7:A (1.96) BS02 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3333 5az8:A (1.7) BS02 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3334 5az8:A (1.7) BS03 GLC ? GO:0005515 ... P0AEX9
    Q62760    		 26694222
    3335 5aza:A (2.08) BS01 GLC ?
    2.4.99.21    		 GO:0005515 ... I6V0B8
    P0AEX9    		 26694222
    3336 5aza:A (2.08) BS02 GLC ?
    2.4.99.21    		 GO:0005515 ... I6V0B8
    P0AEX9    		 26694222
    3337 5b2d:A (2.177) BS01 GLC 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    3338 5b2d:B (2.177) BS01 GLC 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    3339 5b3w:A (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3340 5b3w:A (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3341 5b3w:B (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3342 5b3w:B (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3343 5b3x:A (2.4) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3344 5b3x:A (2.4) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3345 5b3y:A (1.901) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3346 5b3y:A (1.901) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3347 5b3z:A (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3348 5b3z:A (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3349 5b3z:B (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3350 5b3z:B (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3351 5b3z:C (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3352 5b3z:C (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3353 5b3z:D (2.3) BS01 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3354 5b3z:D (2.3) BS02 GLC ?
    5.2.1.8    		 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3355 5bjz:A (1.95) BS01 GLC ? GO:0008643 ... P0AEX9 29321208
    3356 5bjz:A (1.95) BS02 GLC ? GO:0008643 ... P0AEX9 29321208
    3357 5bjz:B (1.95) BS01 GLC ? GO:0008643 ... P0AEX9 29321208
    3358 5bjz:B (1.95) BS02 GLC ? GO:0008643 ... P0AEX9 29321208
    3359 5bk2:A (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    3360 5bk2:A (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    3361 5bk2:B (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    3362 5bk2:B (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    3363 5bmy:A (2.001) BS01 GLC 5.2.1.8 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3364 5bmy:A (2.001) BS02 GLC 5.2.1.8 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    3365 5c7r:A (1.94) BS01 GLC ? GO:0005515 ... P0AEX9 26371748
    3366 5c7r:A (1.94) BS02 GLC ? GO:0005515 ... P0AEX9 26371748
    3367 5c7r:A (1.94) BS03 GLC ? GO:0005515 ... P0AEX9 26371748
    3368 5c7r:B (1.94) BS01 GLC ? GO:0005515 ... P0AEX9 26371748
    3369 5c7r:B (1.94) BS02 GLC ? GO:0005515 ... P0AEX9 26371748
    3370 5c7r:B (1.94) BS03 GLC ? GO:0005515 ... P0AEX9 26371748
    3371 5c8l:A (1.8) BS01 GLC 3.6.1.13 GO:0005829 ... Q6MIH8 26524597
    3372 5c8l:B (1.8) BS01 GLC 3.6.1.13 GO:0005829 ... Q6MIH8 26524597
    3373 5ca3:A (1.8) BS02 GLC 3.2.1.- GO:0004555 ... P42592 27688023
    3374 5ca3:B (1.8) BS05 GLC 3.2.1.- GO:0004555 ... P42592 27688023
    3375 5cfv:A (1.8) BS01 GLC ? GO:0005515 ... P0AEX9 27634041
    3376 5cfv:A (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 27634041
    3377 5cgm:A (1.95) BS01 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3378 5cgm:A (1.95) BS02 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3379 5cgm:B (1.95) BS01 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3380 5cgm:B (1.95) BS02 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3381 5cgt:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    3382 5cgt:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    3383 5cgt:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    3384 5cim:B (3.32) BS01 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3385 5cim:B (3.32) BS02 GLC 2.4.99.16 GO:0004553 ... G7CL00 26616850
    3386 5clt:A (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3387 5clt:B (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3388 5clt:C (2.79) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3389 5clw:A (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3390 5clw:A (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3391 5clw:A (2.8) BS03 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3392 5clw:A (2.8) BS04 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3393 5clw:A (2.8) BS05 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3394 5clw:A (2.8) BS06 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3395 5clw:B (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3396 5clw:B (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3397 5clw:B (2.8) BS03 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3398 5clw:B (2.8) BS04 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3399 5clw:C (2.8) BS01 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    3400 5clw:C (2.8) BS02 GLC 2.4.1.18 GO:0003824 ... Q04446 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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