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BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 3qe5:A (2.5) BS08 GLC ? N/A P11657 21505225
    2202 3qe5:A (2.5) BS09 GLC ? N/A P11657 21505225
    2203 3qe5:B (2.5) BS01 GLC ? N/A P11657 21505225
    2204 3qe5:B (2.5) BS05 GLC ? N/A P11657 21505225
    2205 3qe5:B (2.5) BS06 GLC ? N/A P11657 21505225
    2206 3qgv:A (2.1) BS01 GLC N/A GO:0004553 ... N/A N/A
    2207 3qgv:A (2.1) BS02 GLC N/A GO:0004553 ... N/A N/A
    2208 3qgv:A (2.1) BS03 GLC N/A GO:0004553 ... N/A N/A
    2209 3qgv:A (2.1) BS04 GLC N/A GO:0004553 ... N/A N/A
    2210 3qgv:A (2.1) BS06 GLC N/A GO:0004553 ... N/A N/A
    2211 3qic:A (2.2) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 21420961
    2212 3qph:A (2.992) BS01 GLC ? GO:0003677 ... Q9HGZ9 23576322
    2213 3qyq:A (1.8) BS01 GLC 4.1.2.4 GO:0003824 ... A0A7J6KBZ0 25284756
    2214 3qyq:A (1.8) BS03 GLC 4.1.2.4 GO:0003824 ... A0A7J6KBZ0 25284756
    2215 3r1b:A (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    2216 3r1b:B (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    2217 3r1b:C (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    2218 3r1b:D (3.0) BS01 GLC 1.14.14.1 GO:0004497 ... P00178 21510666
    2219 3rgu:C (3.0) BS01 GLC ? N/A A1C3L3 22166217
    2220 3rjy:A (2.2) BS01 GLC 3.2.1.4 GO:0000272 ... A7HNC0 22128157
    2221 3rjy:A (2.2) BS02 GLC 3.2.1.4 GO:0000272 ... A7HNC0 22128157
    2222 3rjy:A (2.2) BS03 GLC 3.2.1.4 GO:0000272 ... A7HNC0 22128157
    2223 3rlf:F (2.2) BS01 GLC ? GO:0005515 ... P02916 21825153
    2224 3rlf:F (2.2) BS02 GLC ? GO:0005515 ... P02916 21825153
    2225 3rsz:A (3.009) BS01 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2226 3rsz:A (3.009) BS02 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2227 3rsz:A (3.009) BS03 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2228 3rsz:A (3.009) BS04 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2229 3rsz:A (3.009) BS05 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2230 3rsz:B (3.009) BS01 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2231 3rsz:B (3.009) BS02 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2232 3rsz:B (3.009) BS03 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2233 3rsz:B (3.009) BS04 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2234 3rsz:B (3.009) BS05 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2235 3rt1:A (2.8) BS01 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2236 3rt1:A (2.8) BS02 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2237 3rt1:A (2.8) BS03 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2238 3rt1:A (2.8) BS04 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2239 3rt1:A (2.8) BS05 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2240 3rt1:C (2.8) BS01 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2241 3rt1:C (2.8) BS02 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2242 3rt1:C (2.8) BS03 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2243 3rt1:D (2.8) BS01 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2244 3rt1:D (2.8) BS02 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2245 3rt1:D (2.8) BS03 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2246 3rt1:D (2.8) BS04 GLC 2.4.1.11 GO:0004373 ... P27472 21835915
    2247 3rum:A (1.851) BS03 GLC ? GO:0005515 ... P0AEX9 22352468
    2248 3rum:A (1.851) BS04 GLC ? GO:0005515 ... P0AEX9 22352468
    2249 3s41:A (2.18) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 N/A
    2250 3s4b:A (2.4) BS01 GLC 2.4.1.20 GO:0003824 ... Q7WTR6 N/A
    2251 3s4b:A (2.4) BS02 GLC 2.4.1.20 GO:0003824 ... Q7WTR6 N/A
    2252 3s4b:B (2.4) BS01 GLC 2.4.1.20 GO:0003824 ... Q7WTR6 N/A
    2253 3s4b:B (2.4) BS02 GLC 2.4.1.20 GO:0003824 ... Q7WTR6 N/A
    2254 3s4b:B (2.4) BS03 GLC 2.4.1.20 GO:0003824 ... Q7WTR6 N/A
    2255 3s7z:B (2.002) BS01 GLC ? GO:0006520 ... Q8ZJZ9 N/A
    2256 3s9c:A (1.8) BS03 GLC 3.4.21.95 GO:0004252 ... P18965 21871889
    2257 3ser:A (2.35) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2258 3ser:A (2.35) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2259 3ser:C (2.35) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2260 3ser:C (2.35) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2261 3ses:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2262 3ses:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2263 3ses:C (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2264 3ses:C (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2265 3set:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2266 3set:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2267 3set:C (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2268 3set:C (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2269 3seu:A (1.85) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2270 3seu:A (1.85) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2271 3sev:A (3.05) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2272 3sev:A (3.05) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2273 3sev:C (3.05) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2274 3sev:C (3.05) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2275 3sev:E (3.05) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2276 3sev:E (3.05) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2277 3sew:A (1.55) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2278 3sew:A (1.55) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2279 3sex:A (1.95) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2280 3sex:A (1.95) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2281 3sex:C (1.95) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2282 3sex:C (1.95) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2283 3sey:A (1.85) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2284 3sey:A (1.85) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2285 3sey:C (1.85) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2286 3sey:C (1.85) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2287 3sey:E (1.85) BS01 GLC ? GO:0005515 ... P0AEX9 21898649
    2288 3sey:E (1.85) BS02 GLC ? GO:0005515 ... P0AEX9 21898649
    2289 3so3:C (2.1) BS01 GLC N/A N/A N/A 22154938
    2290 3sp3:A (1.801) BS01 GLC 3.2.1.17 GO:0003796 ... P00698 N/A
    2291 3t3z:B (2.35) BS01 GLC 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    2292 3t3z:D (2.35) BS01 GLC 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    2293 3t6u:A (2.213) BS01 GLC 3.2.1.17 GO:0003796 ... P00698 N/A
    2294 3t7d:A (1.7) BS01 GLC 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    2295 3t7d:A (1.7) BS02 GLC 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    2296 3t7d:B (1.7) BS01 GLC 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    2297 3t7d:B (1.7) BS02 GLC 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    2298 3t7o:A (1.85) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2299 3tan:A (1.53) BS03 GLC N/A GO:0003676 ... N/A 22006298
    2300 3tap:A (1.655) BS03 GLC N/A GO:0003676 ... N/A 22006298
    2301 3tap:A (1.655) BS05 GLC N/A GO:0003676 ... N/A 22006298
    2302 3taq:A (1.65) BS03 GLC N/A GO:0003676 ... N/A 22006298
    2303 3taq:A (1.65) BS05 GLC N/A GO:0003676 ... N/A 22006298
    2304 3tar:A (1.6) BS03 GLC N/A GO:0003676 ... N/A 22006298
    2305 3tar:A (1.6) BS05 GLC N/A GO:0003676 ... N/A 22006298
    2306 3top:B (2.881) BS01 GLC 3.2.1.20 GO:0003824 ... O43451 22058037
    2307 3tsa:B (1.7) BS01 GLC 2.4.1.- GO:0008194 ... Q9ALM8 22283226
    2308 3u2u:A (1.45) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2309 3u2u:A (1.45) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2310 3u2u:A (1.45) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2311 3u2u:A (1.45) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2312 3u2u:B (1.45) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2313 3u2u:B (1.45) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2314 3u2u:B (1.45) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2315 3u2v:A (1.5) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2316 3u2v:A (1.5) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2317 3u2v:A (1.5) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2318 3u2v:A (1.5) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2319 3u2v:A (1.5) BS05 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2320 3u2v:B (1.5) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2321 3u2v:B (1.5) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2322 3u2v:B (1.5) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2323 3u2v:B (1.5) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2324 3u2w:A (1.68) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2325 3u2w:B (1.68) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    2326 3u75:D (2.68) BS03 GLC 3.2.1.26 GO:0004553 ... E5D0X5 22511773
    2327 3ueq:A (1.85) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 22210773
    2328 3uer:A (2.1) BS02 GLC 2.4.1.4 GO:0005975 ... Q1J0W0 22210773
    2329 3uer:A (2.1) BS04 GLC 2.4.1.4 GO:0005975 ... Q1J0W0 22210773
    2330 3uyl:B (1.85) BS02 GLC 2.4.1.- GO:0008194 ... Q9ALM8 22283226
    2331 3v0w:H (1.73) BS03 GLC N/A N/A N/A 23184990
    2332 3v14:A (1.7) BS01 GLC 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    2333 3v14:A (1.7) BS02 GLC 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    2334 3v8v:A (2.6) BS01 GLC 2.1.1.173
    2.1.1.264
    GO:0003676 ... P75864 22362734
    2335 3v8v:B (2.6) BS02 GLC 2.1.1.173
    2.1.1.264
    GO:0003676 ... P75864 22362734
    2336 3v97:A (2.2) BS01 GLC 2.1.1.173
    2.1.1.264
    GO:0003676 ... P75864 22362734
    2337 3v97:B (2.2) BS02 GLC 2.1.1.173
    2.1.1.264
    GO:0003676 ... P75864 22362734
    2338 3vd8:A (2.0685) BS01 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    2339 3vd8:A (2.0685) BS02 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    2340 3vd8:A (2.0685) BS03 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    2341 3vd8:A (2.0685) BS04 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    2342 3vev:A (1.8) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22298776
    2343 3vey:A (2.25) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22298776
    2344 3vf6:A (1.86) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22298776
    2345 3vgf:A (2.3) BS01 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2346 3vgf:A (2.3) BS02 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2347 3vgg:A (2.66) BS01 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2348 3vgg:A (2.66) BS02 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2349 3vgg:A (2.66) BS03 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2350 3vgg:A (2.66) BS04 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2351 3vgh:A (2.6) BS01 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2352 3vgh:A (2.6) BS02 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2353 3vgh:A (2.6) BS03 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2354 3vgh:A (2.6) BS04 GLC 3.2.1.141 GO:0004553 ... Q55088 22334583
    2355 3vm7:A (2.25) BS02 GLC 3.2.1.1 GO:0004556 ... K9L8F3 23536251
    2356 3vmo:A (1.9) BS02 GLC 3.2.1.11 N/A Q54443 22337884
    2357 3vmo:A (1.9) BS03 GLC 3.2.1.11 N/A Q54443 22337884
    2358 3vmo:A (1.9) BS04 GLC 3.2.1.11 N/A Q54443 22337884
    2359 3vq7:A (1.63) BS01 GLC 3.1.13.2
    3.1.26.13
    GO:0003676 ... Q72498 23139382
    2360 3vq7:B (1.63) BS01 GLC 3.1.13.2
    3.1.26.13
    GO:0003676 ... Q72498 23139382
    2361 3vqa:A (1.9) BS01 GLC 3.1.13.2
    3.1.26.13
    GO:0003676 ... Q72498 23139382
    2362 3vqa:B (1.9) BS01 GLC 3.1.13.2
    3.1.26.13
    GO:0003676 ... Q72498 23139382
    2363 3vqq:A (2.0) BS01 GLC 3.1.13.2
    3.1.26.13
    GO:0003676 ... Q72498 23139382
    2364 3vu2:A (2.23) BS01 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2365 3vu2:A (2.23) BS02 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2366 3vu2:A (2.23) BS03 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2367 3vu2:B (2.23) BS01 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2368 3vu2:B (2.23) BS02 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2369 3vu2:B (2.23) BS03 GLC 2.4.1.18 GO:0003824 ... Q01401 22771800
    2370 3w37:A (1.7) BS01 GLC 3.2.1.20 GO:0003824 ... L0N7E5 23687304
    2371 3w7s:A (1.9) BS02 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2372 3w7s:A (1.9) BS03 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2373 3w7s:A (1.9) BS04 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2374 3w7s:A (1.9) BS05 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2375 3w7s:A (1.9) BS06 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2376 3w7s:B (1.9) BS02 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2377 3w7s:B (1.9) BS03 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2378 3w7s:B (1.9) BS04 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2379 3w7s:B (1.9) BS05 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2380 3w7s:B (1.9) BS06 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2381 3w7s:B (1.9) BS07 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    2382 3w7w:A (2.0) BS02 GLC 3.2.1.- GO:0004555 ... P42592 23826932
    2383 3w7w:B (2.0) BS02 GLC 3.2.1.- GO:0004555 ... P42592 23826932
    2384 3wba:A (1.9) BS01 GLC 3.2.1.21 GO:0004553 ... Q8L7J2 23811195
    2385 3wbe:A (1.97) BS01 GLC 3.2.1.21 GO:0004553 ... Q8L7J2 23811195
    2386 3wdi:A (2.2) BS01 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2387 3wdi:A (2.2) BS02 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2388 3wdi:A (2.2) BS03 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2389 3wdi:A (2.2) BS04 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2390 3wdi:A (2.2) BS05 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2391 3wdi:A (2.2) BS06 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2392 3wdi:A (2.2) BS07 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2393 3wdj:A (2.22) BS01 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2394 3wdj:A (2.22) BS02 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2395 3wdj:A (2.22) BS03 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2396 3wdj:A (2.22) BS04 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2397 3wdj:A (2.22) BS05 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2398 3wdj:A (2.22) BS06 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2399 3wdj:A (2.22) BS07 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A
    2400 3wdj:A (2.22) BS08 GLC 3.2.1.41 GO:0004553 ... K9L0H1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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