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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1axz:A (1.95) BS01 GLA ? GO:0030246 ... P16404 9545381 MOAD: Ka=1570M^-1
    2 1bos:A (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3 1bos:A (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    4 1bos:A (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5 1bos:A (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    6 1bos:B (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    7 1bos:B (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    8 1bos:B (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    9 1bos:C (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    10 1bos:C (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    11 1bos:C (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    12 1bos:D (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    13 1bos:D (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    14 1bos:D (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    15 1bos:E (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    16 1bos:E (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    17 1bos:F (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    18 1bos:F (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    19 1bos:F (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    20 1bos:G (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    21 1bos:G (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    22 1bos:G (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    23 1bos:H (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    24 1bos:H (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    25 1bos:H (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    26 1bos:H (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    27 1bos:I (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    28 1bos:I (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    29 1bos:I (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    30 1bos:J (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    31 1bos:J (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    32 1bos:K (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    33 1bos:K (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    34 1bos:K (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    35 1bos:L (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    36 1bos:L (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    37 1bos:L (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    38 1bos:M (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    39 1bos:M (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    40 1bos:M (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    41 1bos:N (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    42 1bos:N (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    43 1bos:N (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    44 1bos:O (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    45 1bos:O (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    46 1bos:P (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    47 1bos:P (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    48 1bos:P (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    49 1bos:Q (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    50 1bos:Q (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    51 1bos:Q (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    52 1bos:Q (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    53 1bos:R (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    54 1bos:R (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    55 1bos:S (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    56 1bos:S (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    57 1bos:S (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    58 1bos:S (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    59 1bos:T (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    60 1bos:T (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    61 1bos:T (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    62 1c4q:A (1.52) BS02 GLA ? GO:0005576 ... P69179 N/A
    63 1c4q:B (1.52) BS02 GLA ? GO:0005576 ... P69179 N/A
    64 1c4q:C (1.52) BS02 GLA ? GO:0005576 ... P69179 N/A
    65 1c4q:D (1.52) BS02 GLA ? GO:0005576 ... P69179 N/A
    66 1c4q:E (1.52) BS02 GLA ? GO:0005576 ... P69179 N/A
    67 1cqf:A (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    68 1cqf:A (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    69 1cqf:B (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    70 1cqf:B (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    71 1cqf:B (2.2) BS04 GLA ? GO:0005576 ... P69179 N/A
    72 1cqf:C (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    73 1cqf:C (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    74 1cqf:D (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    75 1cqf:D (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    76 1cqf:E (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    77 1cqf:E (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    78 1d1i:A (1.7) BS02 GLA ? GO:0005576 ... P69179 N/A
    79 1d1i:A (1.7) BS04 GLA ? GO:0005576 ... P69179 N/A
    80 1d1i:B (1.7) BS02 GLA ? GO:0005576 ... P69179 N/A
    81 1d1i:C (1.7) BS02 GLA ? GO:0005576 ... P69179 N/A
    82 1d1i:D (1.7) BS02 GLA ? GO:0005576 ... P69179 N/A
    83 1d1i:E (1.7) BS02 GLA ? GO:0005576 ... P69179 N/A
    84 1d1k:A (2.0) BS02 GLA ? GO:0005576 ... P69178 N/A
    85 1d1k:B (2.0) BS02 GLA ? GO:0005576 ... P69178 N/A
    86 1d1k:C (2.0) BS02 GLA ? GO:0005576 ... P69178 N/A
    87 1d1k:D (2.0) BS02 GLA ? GO:0005576 ... P69178 N/A
    88 1d1k:E (2.0) BS02 GLA ? GO:0005576 ... P69178 N/A
    89 1djr:D (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    90 1djr:E (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    91 1djr:F (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    92 1djr:G (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    93 1djr:H (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    94 1e4k:A (3.2) BS02 GLA ? N/A P01857 10917521
    95 1eef:D (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    96 1eef:E (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    97 1eef:F (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    98 1eef:G (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 PDBbind: -logKd/Ki=2.92, IC50=1.2mM
    99 1eef:H (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 PDBbind: -logKd/Ki=2.92, IC50=1.2mM
    100 1eef:L (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    101 1eef:M (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    102 1eef:N (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465 MOAD: ic50=1.2mM
    103 1eef:O (1.8) BS01 GLA ? GO:0005576 ... P32890 11173465
    104 1eef:P (1.8) BS02 GLA ? GO:0005576 ... P32890 11173465
    105 1f31:A (2.6) BS01 GLA 3.4.24.69 GO:0004222 ... P10844 10932256
    106 1hiz:A (2.4) BS01 GLA 3.2.1.8 GO:0004553 ... P40943 15103129
    107 1hql:A (2.2) BS01 GLA ? GO:0030246 ... Q8W1R6 11714721
    108 1hql:B (2.2) BS01 GLA ? GO:0030246 ... Q8W1R6 11714721
    109 1j8r:A (1.8) BS02 GLA ? GO:0007155 ... Q47450 11440716
    110 1l7k:A (1.95) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 11907040
    111 1l7k:B (1.95) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 11907040
    112 1ns0:A (1.85) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    113 1ns0:B (1.85) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    114 1ns8:A (1.8) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    115 1ns8:B (1.8) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    116 1nsm:B (1.85) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    117 1nsu:A (1.8) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    118 1nsu:B (1.8) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 12717027
    119 1oko:B (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    120 1oko:C (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    121 1oko:D (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    122 1pie:A (2.1) BS01 GLA 2.7.1.6 GO:0000287 ... Q9R7D7 12796487
    123 1s4e:A (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    124 1s4e:B (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    125 1s4e:C (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    126 1s4e:D (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    127 1s4e:E (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    128 1s4e:F (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    129 1s4e:G (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    130 1s4e:H (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    131 1s4e:I (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    132 1tyu:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    133 1tyw:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    134 1tyw:A (1.8) BS04 GLA 3.2.1.- N/A P12528 8855221
    135 1tyx:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    136 1tyx:A (1.8) BS04 GLA 3.2.1.- N/A P12528 8855221
    137 1uas:A (1.5) BS01 GLA 3.2.1.22 GO:0000272 ... Q9FXT4 12657636
    138 1ugy:A (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    139 1ugy:C (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    140 1ugy:E (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    141 1ugy:G (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    142 1urx:A (1.7) BS01 GLA 3.2.1.81 GO:0004553 ... G0L322 15062085
    143 1wuu:A (2.5) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 15590630
    144 1wuu:B (2.5) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 15590630
    145 1wuu:C (2.5) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 15590630
    146 1wuu:D (2.5) BS01 GLA 2.7.1.6 GO:0004335 ... P51570 15590630
    147 1ww4:B (2.3) BS02 GLA 3.1.21.- GO:0004518 ... Q6WY08 16051274
    148 2aj4:A (2.4) BS01 GLA 2.7.1.6 GO:0000411 ... P04385 16115868
    149 2aj4:B (2.4) BS01 GLA 2.7.1.6 GO:0000411 ... P04385 16115868
    150 2bos:A (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    151 2bos:A (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    152 2bos:B (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    153 2bos:B (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    154 2bos:C (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    155 2bos:E (2.0) BS02 GLA ? GO:0005576 ... Q47644 10745005
    156 2bos:E (2.0) BS04 GLA ? GO:0005576 ... Q47644 10745005
    157 2c5c:A (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    158 2c5c:A (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    159 2c5c:B (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    160 2c5c:B (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    161 2c5c:C (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    162 2c5c:C (2.94) BS02 GLA ? GO:0005576 ... P69178 N/A
    163 2c5c:C (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    164 2c5c:C (2.94) BS04 GLA ? GO:0005576 ... P69178 N/A
    165 2c5c:D (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    166 2c5c:D (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    167 2c5c:E (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    168 2c5c:E (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    169 2c5c:F (2.94) BS02 GLA ? GO:0005576 ... P69178 N/A
    170 2c5c:F (2.94) BS03 GLA ? GO:0005576 ... P69178 N/A
    171 2c5c:G (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    172 2c5c:H (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    173 2c5c:H (2.94) BS02 GLA ? GO:0005576 ... P69178 N/A
    174 2c5c:H (2.94) BS04 GLA ? GO:0005576 ... P69178 N/A
    175 2c5c:I (2.94) BS01 GLA ? GO:0005576 ... P69178 N/A
    176 2c5c:I (2.94) BS02 GLA ? GO:0005576 ... P69178 N/A
    177 2c5c:J (2.94) BS02 GLA ? GO:0005576 ... P69178 N/A
    178 2dei:A (1.7) BS01 GLA 2.7.1.6 GO:0000287 ... O58107 N/A
    179 2dej:A (1.5) BS01 GLA 2.7.1.6 GO:0000287 ... O58107 N/A
    180 2du0:A (2.7) BS01 GLA ? GO:0030246 ... O24313 17057334
    181 2du0:B (2.7) BS01 GLA ? GO:0030246 ... O24313 17057334
    182 2du0:C (2.7) BS01 GLA ? GO:0030246 ... O24313 17057334
    183 2du0:D (2.7) BS01 GLA ? GO:0030246 ... O24313 17057334
    184 2dvg:A (2.78) BS01 GLA ? GO:0030246 ... P02872 17057347
    185 2dvg:B (2.78) BS01 GLA ? GO:0030246 ... P02872 17057347
    186 2dvg:C (2.78) BS01 GLA ? GO:0030246 ... P02872 17057347
    187 2dvg:D (2.78) BS01 GLA ? GO:0030246 ... P02872 17057347
    188 2e53:A (2.4) BS01 GLA ? GO:0030246 ... O24313 17510954
    189 2e53:B (2.4) BS01 GLA ? GO:0030246 ... O24313 17510954
    190 2e53:C (2.4) BS01 GLA ? GO:0030246 ... O24313 17510954
    191 2e53:D (2.4) BS01 GLA ? GO:0030246 ... O24313 17510954
    192 2e7q:A (2.75) BS01 GLA ? GO:0030246 ... O24313 17510954
    193 2e7q:B (2.75) BS01 GLA ? GO:0030246 ... O24313 17510954
    194 2e7q:C (2.75) BS01 GLA ? GO:0030246 ... O24313 17510954
    195 2g7c:A (2.0) BS02 GLA 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    196 2g7c:A (2.0) BS04 GLA 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    197 2g7c:B (2.0) BS02 GLA 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    198 2g7c:B (2.0) BS04 GLA 2.4.1.-
    3.4.22.-    		 N/A P16154 16622409
    199 2i58:A (2.8) BS01 GLA ? GO:0055085 ... A0A0H2URJ7 N/A
    200 2i58:B (2.8) BS01 GLA ? GO:0055085 ... A0A0H2URJ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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