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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ceq:A (2.14) BS01 GIM 3.2.1.23 GO:0004553 ... P22498 17002288 MOAD: Ki=53nM
    PDBbind: -logKd/Ki=7.28, Ki=53nM
    2 2ceq:B (2.14) BS01 GIM 3.2.1.23 GO:0004553 ... P22498 17002288 MOAD: Ki=53nM
    3 2ces:A (2.15) BS01 GIM 3.2.1.21 GO:0004553 ... Q08638 17002288 MOAD: Kd=56nM
    PDBbind: -logKd/Ki=7.25, Kd=56nM
    4 2ces:B (2.15) BS01 GIM 3.2.1.21 GO:0004553 ... Q08638 17002288 MOAD: Kd=56nM
    5 3d4z:A (1.39) BS02 GIM 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=13uM
    PDBbind: -logKd/Ki=4.89, Ki=13uM
    6 4re3:A (2.55) BS01 GIM 3.2.1.25 GO:0004553 ... A2YPH1 N/A PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    7 5bx4:A (1.65) BS01 GIM 3.2.1.45 GO:0004348 ... F6BL85 27115290 MOAD: Ki=0.34uM
    8 6eug:A (1.61) BS01 GIM 3.2.1.73 GO:0004553 ... Q8A1H8 30349080
    9 7bzm:A (2.3) BS01 GIM 3.2.1.21 GO:0004553 ... Q75I93 32549280
    10 7bzm:B (2.3) BS02 GIM 3.2.1.21 GO:0004553 ... Q75I93 32549280
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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