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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dbw:B (1.8) BS01 GGL 2.3.2.2
    3.4.19.13    		 GO:0006751 ... P18956 16618936
    2 2dbw:D (1.8) BS01 GGL 2.3.2.2
    3.4.19.13    		 GO:0006751 ... P18956 16618936
    3 7f5x:A (3.5) BS01 GGL 1.2.1.41
    2.7.2.11    		 GO:0003824 ... Q9VNW6 35286254
    4 7f5x:B (3.5) BS01 GGL 1.2.1.41
    2.7.2.11    		 GO:0003824 ... Q9VNW6 35286254
    5 7f5x:C (3.5) BS01 GGL 1.2.1.41
    2.7.2.11    		 GO:0003824 ... Q9VNW6 35286254
    6 7f5x:D (3.5) BS01 GGL 1.2.1.41
    2.7.2.11    		 GO:0003824 ... Q9VNW6 35286254
    7 7fin:R (3.1) BS05 GGL ? GO:0002029 ... P48546 35217653
    8 7ulf:A (1.61) BS01 GGL 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    9 7wj4:A (3.15) BS05 GGL 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    10 7wj4:B (3.15) BS03 GGL 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    11 7wj4:C (3.15) BS05 GGL 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    12 7wj4:D (3.15) BS03 GGL 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    13 8j0g:B (3.7) BS03 GGL 1.2.1.41
    2.7.2.11    		 GO:0003824 ... P54888 N/A
    14 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    15 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    16 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    17 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    18 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    19 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    20 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    21 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    22 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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