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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h8l:A (2.6) BS01 GEM 3.4.17.22 GO:0004180 ... P83852 11278909 PDBbind: -logKd/Ki=7.47, Ki=34nM
    2 3d67:A (3.4) BS02 GEM 3.4.17.20 GO:0003331 ... Q96IY4 18559974 PDBbind: -logKd/Ki=4.96, Ki=11uM
    3 3d67:B (3.4) BS02 GEM 3.4.17.20 GO:0003331 ... Q96IY4 18559974
    4 3d67:C (3.4) BS02 GEM 3.4.17.20 GO:0003331 ... Q96IY4 18559974
    5 3mn8:A (2.7) BS02 GEM 3.4.17.22 GO:0004181 ... P42787 20600119 PDBbind: -logKd/Ki=6.17, Ki=0.67uM
    6 3mn8:B (2.7) BS02 GEM 3.4.17.22 GO:0004181 ... P42787 20600119
    7 3mn8:C (2.7) BS02 GEM 3.4.17.22 GO:0004181 ... P42787 20600119
    8 3mn8:D (2.7) BS02 GEM 3.4.17.22 GO:0004181 ... P42787 20600119
    9 3v7z:A (1.61) BS04 GEM 3.4.17.18 GO:0004181 ... P29068 25619204
    10 4a39:A (1.6) BS02 GEM ? GO:0004181 ... Q9I012 22645247
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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