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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 18gs:A (1.9) BS01 GDN 2.5.1.18 GO:0000302 ... P09211 10452896
    2 18gs:B (1.9) BS01 GDN 2.5.1.18 GO:0000302 ... P09211 10452896
    3 1gsq:A (2.4) BS01 GDN 2.5.1.18 GO:0004364 ... P46088 7727393
    4 1hna:A (1.85) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    5 1hnb:A (3.5) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    6 1hnb:B (3.5) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    7 1hnc:A (3.0) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    8 1hnc:B (3.0) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    9 1hnc:C (3.0) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    10 1hnc:D (3.0) BS01 GDN 2.5.1.18 GO:0004364 ... P28161 8182750
    11 1vf3:A (2.15) BS01 GDN 2.5.1.18 GO:0004364 ... P26697 N/A
    12 1vf3:A (2.15) BS02 GDN 2.5.1.18 GO:0004364 ... P26697 N/A
    13 1vf3:B (2.15) BS01 GDN 2.5.1.18 GO:0004364 ... P26697 N/A
    14 1vf3:B (2.15) BS02 GDN 2.5.1.18 GO:0004364 ... P26697 N/A
    15 1xwk:A (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    16 1xwk:B (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    17 1xwk:C (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    18 4zbb:A (1.8) BS01 GDN ? N/A A0A0R4I985 26348000
    19 4zbb:A (1.8) BS02 GDN ? N/A A0A0R4I985 26348000
    20 4zbb:B (1.8) BS01 GDN ? N/A A0A0R4I985 26348000
    21 4zbb:B (1.8) BS02 GDN ? N/A A0A0R4I985 26348000
    22 4zbb:C (1.8) BS01 GDN ? N/A A0A0R4I985 26348000
    23 4zbb:C (1.8) BS02 GDN ? N/A A0A0R4I985 26348000
    24 4zbb:D (1.8) BS01 GDN ? N/A A0A0R4I985 26348000
    25 4zbb:D (1.8) BS02 GDN ? N/A A0A0R4I985 26348000
    26 5gst:A (2.0) BS01 GDN 2.5.1.18 GO:0004364 ... P04905 8241147
    27 5gst:B (2.0) BS01 GDN 2.5.1.18 GO:0004364 ... P04905 8241147
    28 6f4f:A (1.75) BS01 GDN 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    29 6f4f:B (1.75) BS01 GDN 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    30 6f4f:B (1.75) BS02 GDN 2.5.1.18 GO:0004364 ... A0A384E145 29855494
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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