Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cb8:A (1.9) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 10329169
    2 1fcv:A (2.65) BS01 GCU 3.2.1.35 GO:0004415 ... Q08169 11080624
    3 1fcv:A (2.65) BS02 GCU 3.2.1.35 GO:0004415 ... Q08169 11080624
    4 1hm2:A (2.0) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 11327856
    5 1hm3:A (2.1) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 11327856
    6 1hmu:A (2.0) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 11327856
    7 1hmw:A (2.3) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 11327856
    8 1hv6:A (2.0) BS01 GCU 4.2.2.3 GO:0016829 ... Q9KWU1 11243798
    9 1mqq:A (1.65) BS01 GCU 3.2.1.131 GO:0004553 ... Q8VVD2 14573597
    10 1ofl:A (1.7) BS02 GCU 4.2.2.19 GO:0016829 ... Q46079 15155751
    11 2vzr:A (1.95) BS02 GCU 3.2.1.165 GO:0030246 ... Q56F26 19218457 MOAD: Ka=19000M^-1
    PDBbind: -logKd/Ki=4.28, Kd=52.6uM
    12 2vzr:B (1.95) BS02 GCU 3.2.1.165 GO:0030246 ... Q56F26 19218457 MOAD: Ka=19000M^-1
    13 2w87:A (1.6) BS03 GCU 3.2.1.- GO:0030246 ... Q51815 19218457 PDBbind: -logKd/Ki=4.65, Kd=22.2uM
    14 2w87:B (1.6) BS01 GCU 3.2.1.- GO:0030246 ... Q51815 19218457
    15 3e7j:A (2.1) BS01 GCU 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    16 3e7j:B (2.1) BS01 GCU 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    17 3kl3:A (2.33) BS01 GCU 3.2.1.136 GO:0004348 ... Q45070 21256135
    18 3kl3:B (2.33) BS02 GCU 3.2.1.136 GO:0004348 ... Q45070 21256135
    19 4mhf:A (1.46) BS02 GCU ? GO:0030288 ... Q128M1 25540822
    20 4n91:A (1.7) BS01 GCU ? GO:0030288 ... C7RDZ3 25540822
    21 4qb2:A (1.5) BS01 GCU 3.2.1.8 GO:0030246 ... H6WCZ0 25202007
    22 4qb6:A (1.35) BS01 GCU 3.2.1.8 GO:0030246 ... H6WCZ0 25202007
    23 4zli:A (1.8) BS01 GCU 2.4.1.321 GO:0003824 ... Q21MB1 26041776
    24 5c71:A (2.62) BS02 GCU 3.2.1.31 GO:0003824 ... A7XS03 29146597
    25 5c71:C (2.62) BS02 GCU 3.2.1.31 GO:0003824 ... A7XS03 29146597
    26 6d6w:A (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    27 6d6w:B (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    28 6d6w:C (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    29 6d6w:D (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    30 6syr:A (1.49) BS01 GCU ? N/A B1ZMF4 31740581
    31 6syv:A (1.12) BS02 GCU ? GO:0046872 ... B1ZMF4 31740581
    32 6t0e:A (1.89) BS01 GCU ? GO:0046872 ... B1ZMF4 31740581
    33 6t0e:B (1.89) BS01 GCU ? GO:0046872 ... B1ZMF4 31740581
    34 7b7h:A (1.8) BS01 GCU ? GO:0046872 ... B1ZMF4 35304453
    35 7dfs:A (1.49) BS03 GCU 3.2.1.31 N/A A0A7I8AV45 33645879
    36 8iq9:A (1.58) BS01 GCU ? N/A A0A6M3YLW2 38349137
    37 8iq9:A (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    38 8iq9:B (1.58) BS02 GCU ? N/A A0A6M3YLW2 38349137
    39 8iq9:B (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    40 8iq9:C (1.58) BS05 GCU ? N/A A0A6M3YLW2 38349137
    41 8qcl:A (1.84) BS01 GCU ? N/A A6KWT9 38179933
    42 8qcl:B (1.84) BS01 GCU ? N/A A6KWT9 38179933
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417