Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 84 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e9l:A (2.5) BS01 GCS 3.2.1.52 GO:0000272 ... O35744 11278670
    2 2vzs:A (1.85) BS01 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    3 2vzs:B (1.85) BS01 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    4 2vzv:A (2.7) BS01 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    5 2vzv:A (2.7) BS02 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    6 2vzv:B (2.7) BS01 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    7 2vzv:B (2.7) BS02 GCS 3.2.1.165 GO:0004553 ... Q56F26 18976664
    8 2xad:A (1.7) BS02 GCS ? GO:0016137 ... Q6ZZJ1 21267472
    9 2xad:B (1.7) BS02 GCS ? GO:0016137 ... Q6ZZJ1 21267472
    10 2xad:C (1.7) BS02 GCS ? GO:0016137 ... Q6ZZJ1 21267472
    11 2xad:D (1.7) BS02 GCS ? GO:0016137 ... Q6ZZJ1 21267472
    12 3co4:A (1.92) BS01 GCS ? GO:0004553 ... Q8A3X9 N/A
    13 3wqv:A (2.043) BS01 GCS 3.2.1.14 GO:0004553 ... Q2V6H4 24828498 PDBbind: -logKd/Ki=5.21, Kd=6.2uM
    14 3wqv:A (2.043) BS02 GCS 3.2.1.14 GO:0004553 ... Q2V6H4 24828498 PDBbind: -logKd/Ki=5.21, Kd=6.2uM
    15 3wqw:A (2.0) BS01 GCS 3.2.1.14 GO:0004553 ... Q2V6H4 24828498 PDBbind: -logKd/Ki=5.23, Kd=5.9uM
    16 3wqw:A (2.0) BS02 GCS 3.2.1.14 GO:0004553 ... Q2V6H4 24828498 PDBbind: -logKd/Ki=5.23, Kd=5.9uM
    17 4mfl:A (1.9) BS03 GCS 2.3.1.- GO:0016757 ... Q70AY4 25095906
    18 4mfp:A (2.15) BS03 GCS 2.3.1.- GO:0016757 ... Q70AY4 25095906
    19 4mfq:A (2.0) BS03 GCS 2.3.1.- GO:0016757 ... Q70AY4 25095906
    20 4olt:A (1.59) BS01 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    21 4olt:A (1.59) BS02 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    22 4olt:A (1.59) BS03 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    23 4olt:A (1.59) BS04 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    24 4olt:A (1.59) BS05 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    25 4olt:A (1.59) BS06 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    26 4olt:B (1.59) BS01 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    27 4olt:B (1.59) BS02 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    28 4olt:B (1.59) BS03 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    29 4olt:B (1.59) BS04 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    30 4olt:B (1.59) BS05 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    31 4olt:B (1.59) BS06 GCS 3.2.1.132 GO:0005576 ... E1AXU1 24766439
    32 4p7n:A (1.89) BS01 GCS 3.5.1.- GO:0016810 ... P75906 24994902
    33 4p7n:A (1.89) BS02 GCS 3.5.1.- GO:0016810 ... P75906 24994902
    34 4pk0:A (2.3) BS02 GCS 3.2.1.17 GO:0003796 ... D9IEF7 25147913
    35 4q36:A (2.35) BS01 GCS 2.3.1.- GO:0016757 ... Q70AY4 25095906
    36 4qwp:A (1.7) BS01 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    37 4qwp:A (1.7) BS02 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    38 4qwp:A (1.7) BS03 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    39 4qwp:A (1.7) BS04 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    40 4qwp:A (1.7) BS05 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    41 4qwp:B (1.7) BS01 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    42 4qwp:B (1.7) BS02 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    43 4qwp:B (1.7) BS03 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    44 4qwp:B (1.7) BS04 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    45 4qwp:B (1.7) BS05 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    46 4qwp:B (1.7) BS06 GCS 3.2.1.132 GO:0005576 ... Q8KZM5 26145578
    47 4zz8:A (1.65) BS01 GCS 3.2.1.- N/A Q93IE7 26936968
    48 5dgr:A (1.9) BS01 GCS ? GO:0000272 ... Q6LUT2 26621872
    49 5dgr:B (1.9) BS01 GCS ? GO:0000272 ... Q6LUT2 26621872
    50 5gqb:A (2.7) BS01 GCS ? GO:0004553 ... Q4AE59 28053084
    51 5gqb:A (2.7) BS02 GCS ? GO:0004553 ... Q4AE59 28053084
    52 5gqb:A (2.7) BS03 GCS ? GO:0004553 ... Q4AE59 28053084
    53 5gsm:A (1.27) BS01 GCS 3.2.1.- GO:0004553 ... Q76HN4 N/A
    54 5gsm:B (1.27) BS01 GCS 3.2.1.- GO:0004553 ... Q76HN4 N/A
    55 5hwa:A (1.35) BS01 GCS 3.2.1.132 GO:0005576 ... P33673 N/A
    56 5hwa:A (1.35) BS02 GCS 3.2.1.132 GO:0005576 ... P33673 N/A
    57 5hwa:A (1.35) BS03 GCS 3.2.1.132 GO:0005576 ... P33673 N/A
    58 5kf8:A (1.9) BS02 GCS ? GO:0016747 ... Q97ML2 27348258
    59 5kgp:A (1.8) BS02 GCS ? GO:0016747 ... Q97ML2 27348258
    60 5kgp:B (1.8) BS02 GCS ? GO:0016747 ... Q97ML2 27348258
    61 5nnw:D (1.54) BS02 GCS ? GO:0031640 ... Q9SPD4 29242345
    62 5uw4:C (2.98) BS01 GCS 2.4.1.11 GO:0004373 ... P27472 N/A
    63 5vnc:C (2.98) BS01 GCS 2.4.1.11 GO:0004373 ... P27472 N/A
    64 6hwl:B (2.148) BS04 GCS 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    65 6jax:A (1.7) BS01 GCS 3.2.1.14 GO:0004553 ... A0A221ZS22 31053640 PDBbind: -logKd/Ki=4.42, Ki=38.43uM
    66 6jax:A (1.7) BS02 GCS 3.2.1.14 GO:0004553 ... A0A221ZS22 31053640 PDBbind: -logKd/Ki=4.42, Ki=38.43uM
    67 6lwu:A (2.419) BS01 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    68 6lwu:A (2.419) BS02 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    69 6lwu:A (2.419) BS03 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    70 6x2q:A (2.27) BS01 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    71 6x2q:A (2.27) BS02 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    72 6x2q:A (2.27) BS03 GCS ? GO:0005576 ... A0A0C5VFC0 N/A
    73 7c6d:A (1.451) BS01 GCS 3.2.1.132 GO:0005576 ... O07921 33744813
    74 7c6d:A (1.451) BS02 GCS 3.2.1.132 GO:0005576 ... O07921 33744813
    75 7c6d:A (1.451) BS03 GCS 3.2.1.132 GO:0005576 ... O07921 33744813
    76 7c6d:A (1.451) BS04 GCS 3.2.1.132 GO:0005576 ... O07921 33744813
    77 7c6d:A (1.451) BS05 GCS 3.2.1.132 GO:0005576 ... O07921 33744813
    78 7tvp:A (1.3) BS01 GCS N/A N/A N/A 36123347
    79 7tvp:A (1.3) BS02 GCS N/A N/A N/A 36123347
    80 7tvp:A (1.3) BS03 GCS N/A N/A N/A 36123347
    81 8owf:A (1.3) BS01 GCS ? GO:0004553 ... F8UNI5 N/A
    82 8owf:A (1.3) BS02 GCS ? GO:0004553 ... F8UNI5 N/A
    83 8owf:A (1.3) BS03 GCS ? GO:0004553 ... F8UNI5 N/A
    84 8owf:A (1.3) BS04 GCS ? GO:0004553 ... F8UNI5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218