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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eio:A (-1.00) BS01 GCH ? GO:0005504 ... P10289 10806391
    2 2b00:A (1.85) BS03 GCH 3.1.1.4 GO:0002446 ... P00592 17434532
    3 2lfo:A (-1.00) BS01 GCH ? GO:0005504 ... P80226 22298334
    4 2mm3:A (-1.00) BS01 GCH ? GO:0005504 ... P51161 26613247
    5 5y7p:A (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 N/A
    6 5y7p:A (2.1) BS02 GCH ? GO:0016787 ... J7H3P9 N/A
    7 5y7p:F (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 N/A
    8 8bls:A (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    9 8bls:B (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    10 8bls:C (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    11 8bls:D (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    12 8bls:E (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    13 8bls:F (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    14 8bls:G (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    15 8bls:H (2.1) BS01 GCH ? GO:0016787 ... J7H3P9 36963397
    16 8bls:H (2.1) BS02 GCH ? GO:0016787 ... J7H3P9 36963397
    17 8q6r:A (1.9) BS01 GCH N/A N/A N/A N/A
    18 8q6r:A (1.9) BS02 GCH N/A N/A N/A N/A
    19 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    20 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    21 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    22 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    23 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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