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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c82:A (1.7) BS01 GCD 4.2.2.1 GO:0003824 ... Q54873 10843845
    2 1c82:A (1.7) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 10843845
    3 1ofl:A (1.7) BS04 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    4 1ofl:A (1.7) BS06 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    5 1ojm:A (1.78) BS01 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    6 1ojn:A (1.6) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    7 1ojo:A (1.75) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    8 1ojp:A (1.9) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    9 2ahg:A (1.9) BS01 GCD 3.2.1.179 GO:0000272 ... Q9RC92 16893885
    10 2ahg:B (1.9) BS01 GCD 3.2.1.179 GO:0000272 ... Q9RC92 16893885
    11 2d8l:A (1.7) BS01 GCD 3.2.1.172 GO:0003824 ... O34559 16781735
    12 3ank:A (2.02) BS02 GCD 3.2.1.180 GO:0000272 ... Q8E372 21147778
    13 3e80:A (2.35) BS01 GCD 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    14 3e80:B (2.35) BS01 GCD 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    15 3e80:C (2.35) BS02 GCD 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 20404324
    16 4a2m:A (3.4) BS01 GCD 2.7.13.3 N/A Q89YR8 22532667
    17 4a2m:B (3.4) BS02 GCD 2.7.13.3 N/A Q89YR8 22532667
    18 4a2m:B (3.4) BS04 GCD 2.7.13.3 N/A Q89YR8 22532667
    19 4a2m:C (3.4) BS02 GCD 2.7.13.3 N/A Q89YR8 22532667
    20 4a2m:C (3.4) BS04 GCD 2.7.13.3 N/A Q89YR8 22532667
    21 4a2m:D (3.4) BS03 GCD 2.7.13.3 N/A Q89YR8 22532667
    22 5gub:A (1.78) BS01 GCD ? GO:0046872 ... D1AWE0 28432302 PDBbind: -logKd/Ki=6.20, IC50=0.635uM
    23 5gub:B (1.78) BS01 GCD ? GO:0046872 ... D1AWE0 28432302
    24 5gub:C (1.78) BS01 GCD ? GO:0046872 ... D1AWE0 28432302
    25 5gx6:A (1.81) BS02 GCD ? GO:0046872 ... D1AWE0 28432302 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    26 5gx6:B (1.81) BS02 GCD ? GO:0046872 ... D1AWE0 28432302
    27 5gx6:C (1.81) BS02 GCD ? GO:0046872 ... D1AWE0 28432302
    28 5gx7:A (1.991) BS02 GCD ? GO:0046872 ... D1AWE0 28432302 PDBbind: -logKd/Ki=5.56, IC50=2.76uM
    29 5gx7:B (1.991) BS02 GCD ? GO:0046872 ... D1AWE0 28432302
    30 5gx7:C (1.991) BS02 GCD ? GO:0046872 ... D1AWE0 28432302
    31 5uas:A (1.6) BS04 GCD 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    32 5uas:B (1.6) BS04 GCD 4.2.2.- GO:0005886 ... A0A1W2VMZ5 28290654
    33 5xs8:A (1.952) BS02 GCD ? GO:0046872 ... D1AWE0 29208901 PDBbind: -logKd/Ki=5.41, Kd=3.86uM
    34 5xs8:B (1.952) BS02 GCD ? GO:0046872 ... D1AWE0 29208901
    35 5xs8:C (1.952) BS02 GCD ? GO:0046872 ... D1AWE0 29208901
    36 5xs8:D (1.952) BS02 GCD ? GO:0046872 ... D1AWE0 29208901
    37 6byx:A (2.208) BS02 GCD 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    38 6inz:A (2.289) BS01 GCD ? GO:0046872 ... D1AWE0 31204616 PDBbind: -logKd/Ki=5.80, Kd=1.6uM
    39 6ljl:A (1.73) BS04 GCD ? GO:0016829 ... B3C5J6 33627653
    40 6s21:A (2.8) BS03 GCD 3.1.6.- GO:0004065 ... Q8A2F6 32005816
    41 6s21:B (2.8) BS03 GCD 3.1.6.- GO:0004065 ... Q8A2F6 32005816
    42 6s21:C (2.8) BS02 GCD 3.1.6.- GO:0004065 ... Q8A2F6 32005816
    43 6wwx:A (2.2) BS02 GCD 3.2.1.35 GO:0004415 ... P15316 N/A
    44 7eiq:A (1.8) BS01 GCD 4.2.2.20 GO:0003824 ... P59807 34392362
    45 7eiq:A (1.8) BS03 GCD 4.2.2.20 GO:0003824 ... P59807 34392362
    46 7eir:A (1.92) BS02 GCD 4.2.2.20 GO:0003824 ... P59807 34392362
    47 7eis:A (2.5) BS01 GCD 4.2.2.20 GO:0003824 ... P59807 34392362
    48 7yke:A (1.88) BS02 GCD 4.2.2.20 GO:0003824 ... P59807 36478634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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