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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gbt:A (2.0) BS02 GBS 3.4.21.4 GO:0004175 ... P00760 2252895 PDBbind: -logKd/Ki=2.00, Ki=10mM
    2 1rtk:A (2.3) BS02 GBS 3.4.21.47 GO:0004252 ... P00751 15068800
    3 2ah4:X (1.13) BS02 GBS 3.4.21.4 GO:0004175 ... P00760 16636277
    4 3dfl:A (2.0) BS01 GBS 3.4.21.- GO:0004252 ... Q16651 18922802
    5 3rxj:A (1.7) BS02 GBS 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=3.06, IC50=873uM
    6 6zov:A (2.19) BS01 GBS 3.4.21.9 GO:0004252 ... P98073 33033171
    7 6zov:B (2.19) BS01 GBS 3.4.21.9 GO:0004252 ... P98073 33033171
    8 6zov:C (2.19) BS01 GBS 3.4.21.9 GO:0004252 ... P98073 33033171
    9 6zov:D (2.19) BS01 GBS 3.4.21.9 GO:0004252 ... P98073 33033171
    10 7dzd:U (2.0) BS01 GBS 3.4.21.73 GO:0004252 ... P00749 N/A
    11 7meq:A (1.95) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 35676539
    12 7vm4:U (2.01) BS01 GBS 3.4.21.73 GO:0004252 ... P00749 36039386
    13 7vm5:U (1.97) BS01 GBS 3.4.21.73 GO:0004252 ... P00749 36039386
    14 7wr7:B (3.1) BS01 GBS 3.4.21.9 GO:0004252 ... P98073 36376282
    15 7xyd:C (2.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    16 7xyd:D (2.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    17 7y0e:C (2.39) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    18 7y0e:D (2.39) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    19 8hd8:C (2.4) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    20 8hd8:D (2.4) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    21 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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